Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2064 ATGCGGCGGAACAGTCCTGCGTACTACAGTCCTCCGCGGCGAGGATACGGCGGCGGCGGCGGCCGAGGAGGAGGGTCCGGCAGGAGGGGATTCGGTGGGGGCAGGCGCAGGGAAGGTAACAATGGGAGCCTCCTGGTTCGGAACATTCCCCTCGATTGCAGATCCGAGGAGCTTCGCGTTCCTTTCGAACGATTTGGACCTGTTCGTGATGTTTACATACCCAAGGATTATTACTCTGGAGAACCTCGAGGCTTTGCATTTGTGCAGTTTGTGGATCCTTATGATGCCTCAGAGGCACAGTACCATATGAACAGACAGATTTTTGCTGGAAGGGAAATATCTGTAGTTGTGGCTGAAGAGACGAGAAAAAGACCAGAGGAGATGCGCCACAGAACTACTAGAGGACCTGCAGGAGGGAGCTACGGAGGGCGAAGGTCTTCTCATTATGGTGGTGATGGCTGCCAGCCAATTCTTCATATTGCTAGTTTTGTAGTAGCACAGGGCGTTCTCGATCTCGCTCAGTATCACGCTCACCACCTTATCACTCTGGTTCTAGAAATCGATATCGCTCAAGGCAAGTCCTATTCTCCTGCTCCAAGACGGCGAAGCGATTACTCTGCTTCCCCTAGGAGGCAAGCTGAGCACCCCAGATCACCAAGAGGTCCTCCCAGGGAGCGAGATGGTGATCAAAAGCGTAGGTCTTATTCTCCTGCATATGGCAATGGTGTTGAACAGAATCAAGGCAATGGATATGCTGAGAAATCTATGTACAAGTCTGAGGCTGATCGTGGCCAGTGGAAGTCATCGAGATCACCCCCTGGATCTAGATCTAGATCAAGATCTGCTGAATTGTCACCAAGGCGTGAATTATCACCAAGGCGCGAGATGTCACCGAGGCGTGAGTTGTCACCAAGGCGTGGAAGATGA 927 0.5232 MRRNSPAYYSPPRRGYGGGGGRGGGSGRRGFGGGRRREGNNGSLLVRNIPLDCRSEELRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASEAQYHMNRQIFAGREISVVVAEETRKRPEEMRHRTTRGPAGGSYGGRRSSHYGGDGCQPILHIASFVVAQGVLDLAQYHAHHLITLVLEIDIAQGKSYSPAPRRRSDYSASPRRQAEHPRSPRGPPRERDGDQKRRSYSPAYGNGVEQNQGNGYAEKSMYKSEADRGQWKSSRSPPGSRSRSRSAELSPRRELSPRREMSPRRELSPRRGR 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2064 308 MobiDBLite consensus disorder prediction 266 280 - -
Aed3g2064 308 MobiDBLite consensus disorder prediction 1 42 - -
Aed3g2064 308 SUPERFAMILY RNA-binding domain, RBD 40 148 IPR035979 GO:0003676
Aed3g2064 308 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 113 IPR000504 GO:0003723
Aed3g2064 308 MobiDBLite consensus disorder prediction 239 253 - -
Aed3g2064 308 MobiDBLite consensus disorder prediction 281 308 - -
Aed3g2064 308 MobiDBLite consensus disorder prediction 194 308 - -
Aed3g2064 308 PANTHER OS02G0252100 PROTEIN 26 150 - -
Aed3g2064 308 MobiDBLite consensus disorder prediction 204 233 - -
Aed3g2064 308 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 26 150 - -
Aed3g2064 308 SMART rrm1_1 43 116 IPR000504 GO:0003723
Aed3g2064 308 MobiDBLite consensus disorder prediction 121 147 - -
Aed3g2064 308 Gene3D - 35 155 IPR012677 -
Aed3g2064 308 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 120 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2064 Aed-Chr3 24616971 24621051 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2064 24 104 Eukaryotic Initiation Factors Gene Family AT3G11400 37.037 2.18e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2064 K12900 - gmx:100804294 377.867