Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2063 ATGGGGTGCTGCTTCAGTGCCAGCAGGATCAAAGCTGAGAGCCCTCCACGCAATGGTTTGAGTTCAAAGGATGGTAGCAAGGAAGAGTCCAATCCCTCCATTCCTCCAACTCCACGGACGGAGGGTGAGATCTTGAAGTCCTCAAATATGAAGAGCTTCAACTTCAGTGAGCTAAAAACTGCTACAAGGAACTTCCGTCCAGATAGTGTGGTCGGTGAAGGCGGGTTTGGTTGTGTTTTTAAAGGGTGGATTGATGAGCAGACACTTGTACCAGTTAGACCGGGGACTGGCATGGTCATTGCTGTGAAGAGGCTTAACCAAGAAGGTCTTCAGGGACACAGTGAATGGTTGACAGAAATCAACTACCTGGGGCAGCTGCGTCATCCTAATCTTGTGAAACTCATTGGTTACTGCTTAGAGGATGACCAACGGCTTTTGGTGTATGAGTTTTTGACCAAGGGAAGAGCTTCTTACTTTCAACCACTTTCTTGGAACATCCGTATGAAGGTTTCTCTTGATGCTGCCAAGGGTCTTGCATATCTTCATAGCGATGAAGCAAAAGTGATATATCGAGACTTCAAAGCTTCAAATATCTTACTTGATTCGAATTACAATGCGAAACTTTCTGATTTTGGGTTGGCAAAGGATGGACCAGCTGGTGATAAGAGCCATGTCTCTACTAGAGTAATGGGAACATATGGCTATGCTGCTCCTGAATATATGGCCACAGAGACAAGGGTTAAAGTAAAGAGTGAAGAGAGATATCTATACTCCAAGTCTCCAATGCTGGCGCTACTTCAGAACTGCTCCATGCCCCTCGCACGTGCGCTGCGCCCTCCACCTCGCACGCACGTGCGACCTTGTTTCACTGCAGTGTCCTTCGCATCCATTTACCCACGTGCTAACTCCCAGTCTCAGGTTCTCCTCGGCTTCTCCAAAAAGGAGCTGCAACAACTTTCCCTTGATCTCGGTCAGGAAACCTATAGGGGCAATCAACTTCATCATTTTATATACCAGAGGAAGCTCAGAGAAATTCAGGATTTCATTCAGTTGCCTCGGGGATTTAGGAATACTCTTGAGGAAACTGGATGGAAAGTGGGGCGGTCTCCTATTTTCGAAACTGTAACTGCAGCTGATGGAACTGTTAAGTTGTTGTTGAAGTTGGAGGACAATAGATTGATCGAAACTGTTGGCATTCCGGTTATGGTTGACAGTAATTTGACTCGCCTCACAGCATGTGTCTCATCACAGGTTGGTTGCCCTTTACGCTGCTCTTTTTGTGCCACTGGAAAAGGGGGGTTTTCAAGGAATCTTAAGAGACATGAAATTGTTGAACAGGTCTTGGCCATTGAGGAGGTCTTCAAGAATAGGGTGACAAATGTAGTGTTTATGGGAATGGGTGAACCAATGTTAAACCTGAAGGCAGTACTTGAAGCACACAGCTGCTTGAATAAGGATGTGCAAATTGGGCAAAGAATGATAACTATCTCCACTGTGGGCGTTCCAAATACAATAAAGAAACTTGCTTCTCACAAACTTCAATCTACTTTAGCTGTGAGCTTACATGCTCCTAACCAGAAACTTAGGGAGACAATTGTTCCAAGTGCAAAATCCTACCCACTGGATGCACTTATGAGTGACTGCAGAGAATACTTTCAGCAAACTAGTAGGCGGGTTTCCTTTGAATACGCACTTTTAGCTGGAGTCAATGACTCGGTAGACAATGCATTAGAACTTGCTCAATTACTCCATGCAGCGGGCAGTGGATATCACGTCAACTTGATACCTTTCAATCCAATAGAAGGCTCTGAGTATAAGCGTCCTTCCAAGAGAGCAGTGCTAGCATTTTCTGGTGCATTGGAGTCCTCTAAAATAACTGTTAGTGTACGCCAAACAAGAGGACTGGATGCAAATGCAGCTTGTGGTCAGCTACGGAACAAGTTCCAGAAAACTCCTTTAGTCACCGACCCTTTTGATCTTGCAGTCACTGACGATAACAAGTTTGCAGTAAGCAGTTGA 2019 0.4527 MGCCFSASRIKAESPPRNGLSSKDGSKEESNPSIPPTPRTEGEILKSSNMKSFNFSELKTATRNFRPDSVVGEGGFGCVFKGWIDEQTLVPVRPGTGMVIAVKRLNQEGLQGHSEWLTEINYLGQLRHPNLVKLIGYCLEDDQRLLVYEFLTKGRASYFQPLSWNIRMKVSLDAAKGLAYLHSDEAKVIYRDFKASNILLDSNYNAKLSDFGLAKDGPAGDKSHVSTRVMGTYGYAAPEYMATETRVKVKSEERYLYSKSPMLALLQNCSMPLARALRPPPRTHVRPCFTAVSFASIYPRANSQSQVLLGFSKKELQQLSLDLGQETYRGNQLHHFIYQRKLREIQDFIQLPRGFRNTLEETGWKVGRSPIFETVTAADGTVKLLLKLEDNRLIETVGIPVMVDSNLTRLTACVSSQVGCPLRCSFCATGKGGFSRNLKRHEIVEQVLAIEEVFKNRVTNVVFMGMGEPMLNLKAVLEAHSCLNKDVQIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHAPNQKLRETIVPSAKSYPLDALMSDCREYFQQTSRRVSFEYALLAGVNDSVDNALELAQLLHAAGSGYHVNLIPFNPIEGSEYKRPSKRAVLAFSGALESSKITVSVRQTRGLDANAACGQLRNKFQKTPLVTDPFDLAVTDDNKFAVSS 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2063 672 Gene3D Transferase(Phosphotransferase) domain 1 149 254 - -
Aed3g2063 672 ProSiteProfiles Radical SAM core domain profile. 406 636 IPR007197 GO:0003824|GO:0051536
Aed3g2063 672 TIGRFAM rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 303 648 IPR027492 GO:0030488|GO:0070475
Aed3g2063 672 CDD Radical_SAM 419 612 - -
Aed3g2063 672 ProSiteProfiles Protein kinase domain profile. 65 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed3g2063 672 SFLD adenosine C2 methyltransferase (RlmN-like) 303 650 IPR004383 GO:0006364|GO:0008173
Aed3g2063 672 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Aed3g2063 672 Pfam Radical SAM superfamily 415 577 IPR007197 GO:0003824|GO:0051536
Aed3g2063 672 Gene3D - 306 362 - -
Aed3g2063 672 Gene3D Phosphorylase Kinase; domain 1 40 148 - -
Aed3g2063 672 SUPERFAMILY Protein kinase-like (PK-like) 33 243 IPR011009 -
Aed3g2063 672 MobiDBLite consensus disorder prediction 1 43 - -
Aed3g2063 672 PANTHER 23S RRNA METHYLTRANSFERASE 294 655 IPR040072 -
Aed3g2063 672 Gene3D Aldolase class I 369 653 IPR013785 -
Aed3g2063 672 Hamap Dual-specificity RNA methyltransferase RlmN [rlmN]. 305 650 IPR027492 GO:0030488|GO:0070475
Aed3g2063 672 PANTHER RADICAL SAM SUPERFAMILY PROTEIN 294 655 - -
Aed3g2063 672 ProSitePatterns Protein kinases ATP-binding region signature. 71 103 IPR017441 GO:0005524
Aed3g2063 672 SUPERFAMILY Radical SAM enzymes 382 605 - -
Aed3g2063 672 SFLD methyltransferase (Class A) 303 650 - -
Aed3g2063 672 Pfam Protein kinase domain 68 245 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed3g2063 672 MobiDBLite consensus disorder prediction 19 43 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2063 Aed-Chr3 24607611 24615984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2063 29 243 Glycoside Hydrolase AT3G07070 48.936 3.05e-65 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Aed3g2063 Pkinase 5.9e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2063 K06941 - gmx:100801657 747.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g2063 3 24607611 24615984 Aed3g2063 3 24607611 24615984 ECH