Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2059 ATGAGAAAACCTTGTTGTGACAAAGAAAACATCAATAAAGGTGCGTGGTCCAAGCAAGAAGACCAAAAGCTCATTGACTACATACGAGTTCATGGTGAAGGCTGTTGGCGTTCCATTCCCAAAGCTGCTGGGCTGCATCGTTGTGGGAAAAGCTGTAGGCTGAGATGGCTAAACTACTTACGACCAGACATCAAACGTGGAATCTTTGCTGAAGACGAGGAAGACCTCATCATTAAACTCCACGCCCTCCTTGGTAACAGGTGGTCACTGATTGCTGGAAGGTTACCTGGAAGGACAGACAATGAGGTGAAGAACTATTGGAATTCTCACATCCGCAGAAAACTAATCAAGATGGGAATTGATCCAAATAACCATAAGCCACGTCCCCATCATGCTTTTGCTGAGGCTTCTTTTTTTGCATCAACATCTGAATCAATGAACAAAGACCACAAAGTCCCTTTCTTCTTCACAAAGACTAGTCTTCAAGAAGTGGAAGAAGAAGAAACAGCTTTGAATCTTGACCTAACAATTGCTTTACCTTCACCTATGATCATTCGTGCTGTGGAACAAGAAGACAAGCCTACTCAAAATTCTGTTATAGATCTCAACTGTTAG 615 0.426 MRKPCCDKENINKGAWSKQEDQKLIDYIRVHGEGCWRSIPKAAGLHRCGKSCRLRWLNYLRPDIKRGIFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHIRRKLIKMGIDPNNHKPRPHHAFAEASFFASTSESMNKDHKVPFFFTKTSLQEVEEEETALNLDLTIALPSPMIIRAVEQEDKPTQNSVIDLNC 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2059 204 Gene3D - 13 65 - -
Aed3g2059 204 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 115 IPR017930 -
Aed3g2059 204 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Aed3g2059 204 PANTHER MYB TRANSCRIPTION FACTOR 2 194 - -
Aed3g2059 204 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Aed3g2059 204 Gene3D - 68 135 - -
Aed3g2059 204 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 64 IPR017930 -
Aed3g2059 204 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Aed3g2059 204 CDD SANT 71 111 IPR001005 -
Aed3g2059 204 SMART sant 65 113 IPR001005 -
Aed3g2059 204 SMART sant 12 62 IPR001005 -
Aed3g2059 204 CDD SANT 15 60 IPR001005 -
Aed3g2059 204 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Aed3g2059 204 Pfam Myb-like DNA-binding domain 68 110 IPR001005 -
Aed3g2059 204 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2059 Aed-Chr3 24587648 24589159 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2059 2 180 MYB Transcription Factor Family AT4G38620 55.122 2.96e-75 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed3g2059 Myb_DNA-binding 9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2059 K09422 - gmx:100793444 311.997