Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2055 ATGGAGGGTTCACCACCGGAGGCAGTACGGCGGGCGTTGGAGATGCTGCAGCTGAACGACCCCGTTTTGAGGGTCCAAGCGGCGAGGGACATCCGCCGCCTCACGAAGACCTCCCAGCGGTGCCGCCGCCAGCTCCGCCAAGCCGTGGTGCCACTCGTCTCCATGCTCCTCCGAGTCGACTCGCCCGAGTTCCACGAACCCGCGCTTCTCGCTCTGCTTAACCTCGCCGTACAAGACGAAAAGAATAAAATTAGCATTGTGGAAGCTGGTGCATTAGAGCCAATAATTAGTTTCCTAAAGTCACCAAATCCAAATCTGCAGGAGTATGCAACTGCATCTTTGGTCACTCTATCTGCATCTCCAACAAACAAACCAATCATTAGTGCTTGTGGCACCATTCCTCTTCTTGTGGATATTCTAAGAGATGGAAGCCCTCAAGCTAAAGTTGATTCCGTAATGGCTCTGTCCAATTTATCAACACAACCTGAAAACCTCAGCATCATTCTTGAAACAAATGCAACCCCTTTTATAGTTGGTCTTCTCAAAACCTGTAGAAAATCCTCAAAAACAGCTGAGAAGTGTTCTGCTTTGATAGAATCCTTGGTGGGTTATGAAGAGGGGAGAACATCCTTAACATCCGAAGAAGGTGGTGTTCTTGCAGTTGTGGAAGTTCTTGAGAACGGAACCCCACAAAGTAGAGAACATGCTGTTGGAGCATTGCTGACAATGTGCCAAAGCGATAGATGTAAATATAGGGAACCAATTCTTAGAGAAGGTGTTATTCCAGGACTTCTTGAACTTACGGTTCAAGGAACCCCAAAGTCTCAGCCAAAGGCACGTACCCTTTTGCAGTTACTAAGAGAATCTCCATATTCAACAAGACCTGAAGATGAACCTGACACTCTTGAGAACATAGTTTGTGACATCATGTCTCAGATTGATGGGGATGATCAATCTGGTAAAGCAAAGAAGATGCTGGCTGAGATGGTTCAAGTCAGCATGGAGCAGAGTTTGAGACATTTACAGCAAAGGGCTCTTGTATGTACACCTAGTCAGTGA 1059 0.4703 MEGSPPEAVRRALEMLQLNDPVLRVQAARDIRRLTKTSQRCRRQLRQAVVPLVSMLLRVDSPEFHEPALLALLNLAVQDEKNKISIVEAGALEPIISFLKSPNPNLQEYATASLVTLSASPTNKPIISACGTIPLLVDILRDGSPQAKVDSVMALSNLSTQPENLSIILETNATPFIVGLLKTCRKSSKTAEKCSALIESLVGYEEGRTSLTSEEGGVLAVVEVLENGTPQSREHAVGALLTMCQSDRCKYREPILREGVIPGLLELTVQGTPKSQPKARTLLQLLRESPYSTRPEDEPDTLENIVCDIMSQIDGDDQSGKAKKMLAEMVQVSMEQSLRHLQQRALVCTPSQ 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2055 352 PANTHER U BOX DOMAIN-CONTAINING 7 345 - -
Aed3g2055 352 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 131 173 IPR000225 GO:0005515
Aed3g2055 352 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 7 345 - -
Aed3g2055 352 SMART arm_5 161 203 IPR000225 GO:0005515
Aed3g2055 352 SMART arm_5 204 245 IPR000225 GO:0005515
Aed3g2055 352 SMART arm_5 79 119 IPR000225 GO:0005515
Aed3g2055 352 SMART arm_5 38 77 IPR000225 GO:0005515
Aed3g2055 352 SMART arm_5 120 160 IPR000225 GO:0005515
Aed3g2055 352 Gene3D - 165 343 IPR011989 -
Aed3g2055 352 Gene3D - 4 164 IPR011989 -
Aed3g2055 352 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 90 127 IPR000225 GO:0005515
Aed3g2055 352 SUPERFAMILY ARM repeat 8 302 IPR016024 -
Aed3g2055 352 Pfam Armadillo/beta-catenin-like repeat 80 118 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2055 Aed-Chr3 24558382 24562447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2055 9 287 U-box Gene Family AT2G23140 33.808 6.70e-38 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2055 - - gmx:100793971 610.142