Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2054 ATGGCACTCTCTTTGACATCTCATGAGGTCAAGGAGTACCAAAAATGTGTGGCTGAAGAGGAAGATGGCTCACAAAGTACTAATGGGCTCAGCAATGATTCAGCTTCAGCTTCAGCCATAACCCATTCTCCTCCTCTATGTGGCAATGGCTATGTTCATTATAATAGCACAAGTCACCAACTTGAAGAAGCAGAATCTCTTATTAACTTCAAAGCCGATGAGTACAGCAACCTCATGCAAGGTAGTGATCAATCTTTTCTTAGCTTTCAGCAGAGTTGGCTGTTCTCCAAAGAAGAGAGTAATTTGCATGAAAGTTATAACCAATGGAACCATGTTATTAGTCCTAAAAGCACCACAGATACGCGCCTAGTGCAAAATTTCAGTTGCTTTGAAACTTCCACTGGCTATAGCTCCATATTCAATGGTGCTAAAGAGAAGCAACATGGTGATAGTTCATCATCTGGGTGGCTTTACCCTGAACCAAATGTCCCTAGTGATACCCTGCATGAGTCAGCAGCACAAGAATTTGTCTTGAGAAAGCGCTCTTCTATGGAAGAGAACATGAATGCTTCCAATGCCAAGAAGCCATGCACAACTGCAAGTAAAGCAGCAAAACCAAAGTCAAACCCATCCAAGGATCCTCAAAGTGTTGCCGCCAAGAATAGAAGAGAGAGAATAAGTGAGCGGCTTAAGATACTACAAGAACTGGTCCCCAACGGTTCCAAGGTTGATTTGGTGACAATGTTGGAGAAAGCAATTAGTTATGTGAAGTTTCTTCAGTTGCAAGTCAAGGTGTTGGCAGCTGATGAATTTTGGCCTGTCCAAGGTGGAAAAGCACCTGACATTTCTCAAGTAAGACAAGCCATTGATGCCATTCTTTCATCTCAAAGATGA 894 0.4251 MALSLTSHEVKEYQKCVAEEEDGSQSTNGLSNDSASASAITHSPPLCGNGYVHYNSTSHQLEEAESLINFKADEYSNLMQGSDQSFLSFQQSWLFSKEESNLHESYNQWNHVISPKSTTDTRLVQNFSCFETSTGYSSIFNGAKEKQHGDSSSSGWLYPEPNVPSDTLHESAAQEFVLRKRSSMEENMNASNAKKPCTTASKAAKPKSNPSKDPQSVAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLAADEFWPVQGGKAPDISQVRQAIDAILSSQR 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2054 297 MobiDBLite consensus disorder prediction 185 216 - -
Aed3g2054 297 Gene3D - 205 267 IPR036638 GO:0046983
Aed3g2054 297 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 13 295 - -
Aed3g2054 297 SMART finulus 216 265 IPR011598 GO:0046983
Aed3g2054 297 MobiDBLite consensus disorder prediction 144 160 - -
Aed3g2054 297 CDD bHLH_AtIND_like 211 273 - -
Aed3g2054 297 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 13 295 - -
Aed3g2054 297 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 210 259 IPR011598 GO:0046983
Aed3g2054 297 MobiDBLite consensus disorder prediction 185 222 - -
Aed3g2054 297 Pfam Helix-loop-helix DNA-binding domain 220 260 IPR011598 GO:0046983
Aed3g2054 297 MobiDBLite consensus disorder prediction 144 166 - -
Aed3g2054 297 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 208 269 IPR036638 GO:0046983
Aed3g2054 297 MobiDBLite consensus disorder prediction 17 37 - -
Aed3g2054 297 MobiDBLite consensus disorder prediction 20 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2054 Aed-Chr3 24549908 24551380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2054 50 295 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G37800 47.451 4.74e-62 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed3g2054 HLH 1.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2054 - - gmx:106795957 469.929