Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2040 ATGAGGATAGTCTCCATCAGAAAACCTCATCAAAGACGCTTGCAAACGACAACAAGTACCTTCAAAAATTTCCGTGAACTAGCACATTCCAGCCACGTCATCAATCCAAGTGACCTTCTCAACAATAGCGCCTCAACCGTGGGATCGTCTTCTTTTGGGTGGTTCATAGCCGTCAAGATTCTCTACTGTGCAAGCTTAGGAACTTCTTCACAATCTGCTACTCCAATGGCCACTGAAGAGGTTAATAAACCTGAATCGCTTCCACCATTCCCTGAGATGATAGTGAAAGCAGTTGAAGCTCTGAACGAGCCTAAGGGATCCAACAAGTCAGCGATATGGAAGTACATAGAAACAACCTACGGCGAGTTGCAAGACGGAACCGTTTTGGGAAACCACCTGAACAAAATGAAAGACAGCGGAGAACTTGCTTTCATACACAACAACTACATGAAGCCTGACCCAAATGCCCCACCTAAGAGGGGACGTGGAAGGCCACCGAAGCCAAAGGTTCCTCTGCCAGCAGGGACTGTTGTGTCCCCTCCAAGGCCTAGGGGTCGTCCCCCAAAGGACCCTAATGCCCCTCCCAAGTCCCCGCAGGCTAAGCCCGCCACCCCTGGAAGTGGCAGGCCCAGAGGGAGGCCCAAGAAGGTTGCGAGGTCGAGCTCGGCCGTGGCGGCCTCGATCCCTGTCTCCAATGGAAGATCCAGAGGTAGGCCTCCCAAGGTCAAGCCAGCAGAAGTCAGTGTTGAGTCATAG 756 0.5198 MRIVSIRKPHQRRLQTTTSTFKNFRELAHSSHVINPSDLLNNSASTVGSSSFGWFIAVKILYCASLGTSSQSATPMATEEVNKPESLPPFPEMIVKAVEALNEPKGSNKSAIWKYIETTYGELQDGTVLGNHLNKMKDSGELAFIHNNYMKPDPNAPPKRGRGRPPKPKVPLPAGTVVSPPRPRGRPPKDPNAPPKSPQAKPATPGSGRPRGRPKKVARSSSAVAASIPVSNGRSRGRPPKVKPAEVSVES 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2040 251 PANTHER HMG-Y-RELATED PROTEIN A 76 249 IPR031059 GO:0003677|GO:0005634
Aed3g2040 251 SMART AT_hook_2 208 220 IPR017956 GO:0003677
Aed3g2040 251 SMART AT_hook_2 233 245 IPR017956 GO:0003677
Aed3g2040 251 SMART AT_hook_2 159 171 IPR017956 GO:0003677
Aed3g2040 251 SMART AT_hook_2 181 193 IPR017956 GO:0003677
Aed3g2040 251 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 86 153 IPR005818 GO:0000786|GO:0003677|GO:0006334
Aed3g2040 251 SMART h15plus2 84 148 IPR005818 GO:0000786|GO:0003677|GO:0006334
Aed3g2040 251 MobiDBLite consensus disorder prediction 147 251 - -
Aed3g2040 251 MobiDBLite consensus disorder prediction 167 201 - -
Aed3g2040 251 Pfam linker histone H1 and H5 family 88 142 IPR005818 GO:0000786|GO:0003677|GO:0006334
Aed3g2040 251 SUPERFAMILY "Winged helix" DNA-binding domain 83 160 IPR036390 -
Aed3g2040 251 PANTHER HISTONE H1 76 249 - -
Aed3g2040 251 PRINTS High mobility group protein (HMGY) signature 157 169 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Aed3g2040 251 PRINTS High mobility group protein (HMGY) signature 183 194 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Aed3g2040 251 PRINTS High mobility group protein (HMGY) signature 197 216 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Aed3g2040 251 Gene3D - 82 199 IPR036388 -
Aed3g2040 251 PRINTS AT-hook-like domain signature 179 190 IPR017956 GO:0003677
Aed3g2040 251 PRINTS AT-hook-like domain signature 206 216 IPR017956 GO:0003677
Aed3g2040 251 PRINTS AT-hook-like domain signature 159 169 IPR017956 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2040 Aed-Chr3 24472224 24473823 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2040 - - gmx:100793697 236.498
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed7g2184 7 24379334 24385892 Aed3g2040 3 24472224 24473823 PCT