Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2031 ATGGGAAGACAACCATGTTGTGACAAAGTAGGGTTGAAGAAGGGGCCATGGACAGCAGAAGAGGATAAGAAGCTCATCAGCTTCATCCTCACTAATGGCCAATGTTGCTGGAGAGCTGTCCCTAAGCTAGCAGGACTATTAAGGTGTGGAAAGAGTTGCAGGCTCAGGTGGACAAATTACCTTAGGCCAGACTTAAAGAGAGGTCTTCTTTCAGAATATGAAGAGAAAATGGTCATTGATCTTCATGCTCAACTTGGCAATAGATGGTCCAAGATTGCTTCTCACCTCCCTGGAAGAACTGATAATGAGATAAAAAATCATTGGAACACTCACATAAAGAAAAAGCTTAAGAAAATGGGCATTGATCCTGCCACACACAAACCGCTACCTAATGCAACTGAACAAACCCAAAATCAAACCAAACAACAACAACAAACAGTAGTAGAAGAAGAAGAGCAGAACCAACAACCTTTGGAAGTTGACTTTGACCCCAAAGTTGACCCGAATGTGGAGGCAGAGAAGCCAGAGACTTCAGTGGAGTCATCAACCATCACTGAAGACCAAATCATAACAACACTCCAATTTGACACAATGGAGTTAATGAACGGTTTCTGCACAGATGAAGTTCCAATAATTGAACCTGATGAGATTCTAATGCCTTGTGCACCTTCCTCTTCATCCACCACCACTGCCTCTTCATCTTCTTCAAACTCAACCAATTTCCTTGAAGACTTGCAGCTACCAGATTTTGAATGGTCTTGTAATTACAATGATAATAATATAACTATTACTAACAATAACATCAATGAAGACGACGACAACAACAATAGCAGCATGGCCTTGTGGGATGATGACATCATTGACAAACTTAATTGGCTGATTAATGAAGATGATGATGATAGTGATCATGGAAACCAAATGTTTGATGCTCCTCTCACTCAGTTCTCAAAAATGTTCATGGATTCTGAATCTTGGGCATATGGGTTGTTTTGA 993 0.4068 MGRQPCCDKVGLKKGPWTAEEDKKLISFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPATHKPLPNATEQTQNQTKQQQQTVVEEEEQNQQPLEVDFDPKVDPNVEAEKPETSVESSTITEDQIITTLQFDTMELMNGFCTDEVPIIEPDEILMPCAPSSSSTTTASSSSSNSTNFLEDLQLPDFEWSCNYNDNNITITNNNINEDDDNNNSSMALWDDDIIDKLNWLINEDDDDSDHGNQMFDAPLTQFSKMFMDSESWAYGLF 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2031 330 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Aed3g2031 330 Gene3D - 70 156 - -
Aed3g2031 330 MobiDBLite consensus disorder prediction 129 153 - -
Aed3g2031 330 CDD SANT 16 61 IPR001005 -
Aed3g2031 330 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Aed3g2031 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Aed3g2031 330 CDD SANT 74 112 IPR001005 -
Aed3g2031 330 SMART sant 66 114 IPR001005 -
Aed3g2031 330 SMART sant 13 63 IPR001005 -
Aed3g2031 330 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Aed3g2031 330 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Aed3g2031 330 PANTHER MYB TRANSCRIPTION FACTOR 1 302 - -
Aed3g2031 330 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Aed3g2031 330 Gene3D - 11 67 - -
Aed3g2031 330 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 302 - -
Aed3g2031 330 MobiDBLite consensus disorder prediction 121 184 - -
Aed3g2031 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Aed3g2031 330 Coils Coil 133 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2031 Aed-Chr3 24373534 24375951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2031 1 304 MYB Transcription Factor Family AT1G66230 56.721 6.97e-102 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed3g2031 Myb_DNA-binding 1.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2031 K09422 - gmx:100792103 523.472