Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2028 ATGAAGTCCCCTCCGGTCAAACAACTTGTTCTGTTACTCTTTACTACTCTCTTAACCATTGCAGATTCGGATCTAGCTTCGGACAGAGCGGGGTTGTTGTTACTCCGAAGCGCGGTGGGGGGACGCACCTTGTTATGGAACGCGACCCAAACAAGCCCTTGTTCGTGGACAGGCGTCGTATGCGCCAGCAGGAGAGTAACCATGCTGCGTCTTCCGGCGATGGGTCTCTCCGGTTCTCTCCCCTCCGGTTTGGGTAACGTCACCGAACTGCAGACACTCTCTCTCCGCTTCAACGCGCTTACCGGACCAATCCCCGACGATTTCGCTAACCTTAAATCTCTCCGGAACCTCTATTTACAGGGAAACTTCTTCTCCGGCGAAGTCCCCGATTCGGTGTTCGCGTTGCAGAATCTCGTGAGGTTGAATTTAGCTAACAACAATTTCAGCGGCGAGATTTCGCCCAAGTTCAACACTCTCCCTCGTCTCGACACTCTCTATCTCGAACGCAACAATTTCACTGGCTCAATCCCTGACCTCGACTTTCCGCCGCTTGATCAGTTCAACGTCTCGTTTAATTCTCTAACCGGATCCATTCCGAACCGGTTTTCGCGTCTGGACCGAACCGCTTTTCTCGGTAACTCGCTCCTCTGCGGGAAGCCCTTGCAGCTTTGCCCCGGGACCGAGGAGAAGAAGGATAGTAAACTATCCGGCGGCGCCATTGTGGGCATTGTGATCGGTTCCGTGGTTGGTGTGCTGTTGATTCTGCTGCTTTTGTTCTTCTTGTGTAGAAAAAGGAACAGGAAAAATGATAACGAAACCGTGCCACCTGAGAAGCGCATCGTGGAAGGTGAAGTGTCTCGTGAAAAGAGTAATAATGAAAGTGGTGCCAATTCAGGTTCGGCAGTGGCGGGTTCGGTGGAGAAGAGTGAGGTTCGGAGTAGCAGTGGTGGAGATAAAAGTTTAGTGTTTTTTGGGAATGTGAATAGAGTGTTTAGTTTGGATGAGTTGTTGAGGGCCTCTGCGGAAGTTTTAGGTAAAGGCACGTTTGGAACAACTTATAAGGCGACATTGGAGATGGGGGTGAGTGTCGCCGTGAAGAGGTTAAAGGATGTTACTGCGACGGAGAAGGAATTCAGGGAGAAGATTGAGCAAGTGGGGAAGATGATTCATCAAAACTTGGTCCCACTAAGGGGTTATTACTTTAGCAGAGATGAGAAGCTAGTTGTGTATGATTACATGCCTATGGGAAGCTTATCTGCTCTCTTACATGCAAATGGTGGAGTGGGGAGGACTCCATTGAATTGGGAAACAAGGTACCAGAATGTTGAGGAGGAAATGGTGAAGCTCTTGCAGCTTGCTCTTGATTGTACTGCTCAATATCCTGACAAGAGACCTTCAATGGATGTGGTGGCAACCAAGATTGAGGAAATTTCTCATCCTAGTTTAGAGAAAGAGGAAGAAGGGAAGAATCATGATTTTAAAGATTCTGATCATGGTTTTTCCCAACAATACTATTCTGTTGACTCGGCAGTGAGGTCTTGTATGCCTATGTAG 1554 0.4858 MKSPPVKQLVLLLFTTLLTIADSDLASDRAGLLLLRSAVGGRTLLWNATQTSPCSWTGVVCASRRVTMLRLPAMGLSGSLPSGLGNVTELQTLSLRFNALTGPIPDDFANLKSLRNLYLQGNFFSGEVPDSVFALQNLVRLNLANNNFSGEISPKFNTLPRLDTLYLERNNFTGSIPDLDFPPLDQFNVSFNSLTGSIPNRFSRLDRTAFLGNSLLCGKPLQLCPGTEEKKDSKLSGGAIVGIVIGSVVGVLLILLLLFFLCRKRNRKNDNETVPPEKRIVEGEVSREKSNNESGANSGSAVAGSVEKSEVRSSSGGDKSLVFFGNVNRVFSLDELLRASAEVLGKGTFGTTYKATLEMGVSVAVKRLKDVTATEKEFREKIEQVGKMIHQNLVPLRGYYFSRDEKLVVYDYMPMGSLSALLHANGGVGRTPLNWETRYQNVEEEMVKLLQLALDCTAQYPDKRPSMDVVATKIEEISHPSLEKEEEGKNHDFKDSDHGFSQQYYSVDSAVRSCMPM 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2028 517 Gene3D Ribonuclease Inhibitor 32 180 IPR032675 -
Aed3g2028 517 MobiDBLite consensus disorder prediction 270 316 - -
Aed3g2028 517 Pfam Leucine rich repeat N-terminal domain 26 61 IPR013210 -
Aed3g2028 517 SUPERFAMILY Protein kinase-like (PK-like) 342 439 IPR011009 -
Aed3g2028 517 SUPERFAMILY L domain-like 47 222 - -
Aed3g2028 517 ProSitePatterns Protein kinases ATP-binding region signature. 344 366 IPR017441 GO:0005524
Aed3g2028 517 PANTHER LRR RECEPTOR-LIKE KINASE 438 477 - -
Aed3g2028 517 PANTHER LRR RECEPTOR-LIKE KINASE 9 438 - -
Aed3g2028 517 SMART tyrkin_6 338 474 IPR020635 GO:0004713|GO:0006468
Aed3g2028 517 Pfam Protein tyrosine and serine/threonine kinase 342 442 IPR001245 GO:0004672|GO:0006468
Aed3g2028 517 PANTHER OS05G0588300 PROTEIN 9 438 - -
Aed3g2028 517 MobiDBLite consensus disorder prediction 270 289 - -
Aed3g2028 517 Gene3D Ribonuclease Inhibitor 184 224 IPR032675 -
Aed3g2028 517 MobiDBLite consensus disorder prediction 290 316 - -
Aed3g2028 517 PANTHER OS05G0588300 PROTEIN 438 477 - -
Aed3g2028 517 ProSiteProfiles Protein kinase domain profile. 338 517 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed3g2028 517 Gene3D Phosphorylase Kinase; domain 1 304 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2028 Aed-Chr3 24295426 24298936 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2028 24 502 Receptor kinase-like Gene Family AT1G48480 51.772 3.08e-158 463
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Aed3g2028 PK_Tyr_Ser-Thr 5e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2028 - - gmx:100801103 686.026