Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2025 ATGGTTTTGTCATGGACAAAAGGGAGAGTGTTCCGCCGCGCTAGAAAGGGGAAAGACTTGAATTCCGGCGGTTTGGAGATAGAGGTCGCGATTCCCACCCACTTCCGGTGTCCGGTAACATTGGACATGATGAAGGACCCTGTGACCGTTTCGACTGGGATAACTTACGACCGCGACAGCATCGAGAAGTGGATCGACTCCGGGAACCGCACGTGCCCGGTCACCAAAACCGAGTTGACCAGCTTCGACATGATCCCCAACCACGCCATCCGGAGGGTCATCCAGGACTGGTGCGTGGAGCACCGCTCCTACGGCATCGAACGCATCCCCACTCCTCGTATCCCCGTCTCCCCGTACGAGGTTGCCGACACGTGTACGAGGATCCTGTCGGCAGCGCAAAACGGGGACGAGAACAAGTGCGCGGAGCTGGTGAGGAAAATCAAGGCGTGGGGGAAGGAGAGCGAGAGGAACAAGAGGTGCATAGTGGCTAACGGTGCTGCTCTAGCACTATCCAATGCTTTCAACTCTTTCTCACGTGGTTCATCGATCGAGAAGAACGTGGTTGTGTTGGATGAGATTTTAGGTGTTTTGATATGGATGCGTCCTCTTTCCGAAGAGGGTAGATCCGTGTTGGGATCAACGAGTTCTATTTCTTCCATGGTTTGGTTTATGAACGGTAAACACTTATCCACAAGACAAAACGCTGCTTTGTTGCTCAAGGAAATGCGCGTTGAGGCGTTGCTGAAATGTGAAGGCGTCGTTGAGGCTTTGGTTAACATGATTAAGGAGCCTGCTGGGAGTGGTTCCACAAAGGCGTGTTTGTCAACGATTTTCAACTTGGTTAATTACGGAGGTGTGTCGACGAGGACTTGTGAAAGGTTTGTGGAATTGGGTTTGGTATCGCTCTTGTTGGAGAATGTTCTCGTTGATGCGGAGAGAGGGGTGTGTGAGAAGGCTTTGGGGGTGTTGGATTGCATTTGTGACTGCAAGCAAGGGGTGGAGATGGCAAAGGCTAATGCTTTGACTTTGCCTCTTGTGAGTAAGAAGCTTTTGAGGGTGTCTGAGTTGAGTTCAAGCTTTGCAGTTTCGGTTCTTTGGAAGCTTTGTGGTGACAAGAACCAAGAAGGTTTGTTGGTTGAGGCACTTCAAATGGGGGTGTTTCATAAGCTACTTGTTTTGTTGCAAGTGGGTTGTGGTGAGGGAACCAAAGACAAGGCTACGGAGTTGTTGAAGCTGTTGAATGGTTGCAGGAGCAAAGCTGAGTGCGTTGATTCTTCCTCCTTGGATTTCAAGCATTTGAAGAAGCCCTTCTAA 1314 0.5046 MVLSWTKGRVFRRARKGKDLNSGGLEIEVAIPTHFRCPVTLDMMKDPVTVSTGITYDRDSIEKWIDSGNRTCPVTKTELTSFDMIPNHAIRRVIQDWCVEHRSYGIERIPTPRIPVSPYEVADTCTRILSAAQNGDENKCAELVRKIKAWGKESERNKRCIVANGAALALSNAFNSFSRGSSIEKNVVVLDEILGVLIWMRPLSEEGRSVLGSTSSISSMVWFMNGKHLSTRQNAALLLKEMRVEALLKCEGVVEALVNMIKEPAGSGSTKACLSTIFNLVNYGGVSTRTCERFVELGLVSLLLENVLVDAERGVCEKALGVLDCICDCKQGVEMAKANALTLPLVSKKLLRVSELSSSFAVSVLWKLCGDKNQEGLLVEALQMGVFHKLLVLLQVGCGEGTKDKATELLKLLNGCRSKAECVDSSSLDFKHLKKPF 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2025 437 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 30 104 IPR013083 -
Aed3g2025 437 ProSiteProfiles U-box domain profile. 30 104 IPR003613 GO:0004842|GO:0016567
Aed3g2025 437 Pfam U-box domain 31 102 IPR003613 GO:0004842|GO:0016567
Aed3g2025 437 SUPERFAMILY RING/U-box 27 107 - -
Aed3g2025 437 Gene3D - 120 413 IPR011989 -
Aed3g2025 437 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 437 - -
Aed3g2025 437 CDD RING-Ubox_PUB 35 76 IPR045210 -
Aed3g2025 437 SMART Ubox_2 34 97 IPR003613 GO:0004842|GO:0016567
Aed3g2025 437 PANTHER WDSAM1 PROTEIN 7 437 IPR045185 GO:0061630
Aed3g2025 437 SUPERFAMILY ARM repeat 127 413 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2025 Aed-Chr3 24279491 24280804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2025 26 437 U-box Gene Family AT5G37490 46.062 2.71e-118 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2025 - - gmx:100795913 755.362