Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2024 ATGACGATTGCTTCTTCCTCCAGAAAAGTAAACAAGGATGAACAGGTGGCACAACGTAAAATCCAGAAGCCAAGATGGCTTGAGGCTTTTCTGAGGAAAACGTTCTTTGACTCATGTCCATCTCATCCATTTCGTAGGAATGAGTTAAATAAGTATTGTATAAACTGCAATTTATCAGCTTGCCAATATTGTGTAACAATAGGTCCTCATCGCCATCACAAGATACTTAAAATCTATAGACATGTTTACAAGGATGTTGTCTCCCTTGCAACTATGGAAAAATTTATTGACAGTTCACAAATTCAGCCTTACAAATGCAACAAGCGATTAGTTATTTCTCTGAATCCTCTCCCACATTCTGGTTCAACAACAAATAATGAGGCATCATGCAATACTTGCAATAGAAAATTGACTGAACCCGATTTATATCGCTATTGCTCCATTTCTTGCAAGGTCAAAGCTGTTTTAAGTAAGAATGATGATTCAATTCCTCCTTTCATTTCCATCAAGACTCCTCATCCTCTTCCGGAAAAGCAGGAGGAAACTTCTGAACCCCAAAACCTAAGAAAGAGGAAAAGAAAGGGAATACCTCACAGAGCTCCCTTTTTCTAA 612 0.3807 MTIASSSRKVNKDEQVAQRKIQKPRWLEAFLRKTFFDSCPSHPFRRNELNKYCINCNLSACQYCVTIGPHRHHKILKIYRHVYKDVVSLATMEKFIDSSQIQPYKCNKRLVISLNPLPHSGSTTNNEASCNTCNRKLTEPDLYRYCSISCKVKAVLSKNDDSIPPFISIKTPHPLPEKQEETSEPQNLRKRKRKGIPHRAPFF 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2024 203 ProSiteProfiles Zinc finger B-box type profile. 39 78 IPR000315 GO:0008270
Aed3g2024 203 MobiDBLite consensus disorder prediction 174 190 - -
Aed3g2024 203 CDD Bbox2 39 78 - -
Aed3g2024 203 MobiDBLite consensus disorder prediction 166 203 - -
Aed3g2024 203 Gene3D Classic Zinc Finger 32 102 - -
Aed3g2024 203 PANTHER TRANSCRIPTION FACTOR FAMILY PROTEIN, PUTATIVE-RELATED 5 203 - -
Aed3g2024 203 SUPERFAMILY B-box zinc-binding domain 38 80 - -
Aed3g2024 203 Pfam PLATZ transcription factor 80 152 IPR006734 -
Aed3g2024 203 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 5 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2024 Aed-Chr3 24272808 24275734 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Aed3g2024 PLATZ 1.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2024 - - tcc:18601328 282.337