Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2023 ATGTCTTTTGCTCTGATCGAAGCATGCAAGAAGCGTAAACGGTGGCCAAAGTTTTTCAGGTTTAACTCGTTCGGCGACCCTGGTGTTCCACTTTCACCGTTGGGTCCCTTTCGCGATAACGTTCGCGTTTTCCTTCAAGAAGCTGGCGAACTCGAAGACTACACTGTCTCCGGGAACCCCCTTTGGTGCATTCTTCTCATCCACGACAAGTCAAACGTCATGGCTCCTCTTTACATCATCGAAGAACACGTTGACCGCTCTGCGCACCCCTTTTGCGATCACTGCCGCTGCGTAGGTTGGAGTGGCCATTTTGTATCAAAGAGAAGGTATCATTTTATAATCCCGATGGACAATGGGTGGCATAAACCCTTAGATGAAGAAGATTCATTAGACAATCAGAAGCATCTGTTGCATGGAGTGACTCATTGCAATGGGTATGGCCATTTGCTCTGTGTCAATGGCATTGAAGGAGGCTCCAAGGTTCTTAGTGGCAGAGAGATCATGGATCTCTGGGATAGGATATGCACAAACCTCCGAGCGAGGACAATTGCAGTGGAAGATGTTTCATGTAAGAGATCTATGGACCTTCGCTTACTTCATGGAGTTGCCTATGGACACTCCTGGTTCGGTAGGTGGGGTTATAGGTTTTCCCGTGGAAGCTTTGGAGTGACAGAGCGAGAATACAATGAAGCAATGACAACACTTGGTTCCTTGGAGCTTGACATGATTGTAAAAGATTTGAGTAAGACAAAGTACAACCAAGAAATCAAACAAATGATTCGGTGCTATAGAGATATGAGTGAGACTCATATTATCTCACTGAGGGATCTTCTAAGGTTTATGCTAACTGTCAAGTCTTCTCGTGCTCCTGTGCTTAAGATAACAGCCACTTATTCTGCTGTTACTGCTGCTGAATCTTCTTCTTCCGCATCAATCTCAAGAAGTTCAACCAAACACACACTTCCACACAGATCAAATTCCATGAAGGAGAAATCTGTGAGGTACAAGAAGTTCAGCAATGCAGTGACTAACATGGATAGCAGGTGGCCCACAAGGAGACTAGAGTTTGCAGCTCAAGTGATTGTGGATGCGCTGAAAGCAAACAAGTCTGTCAAGCCAGGCTCAGGAGGGATGACAAGGCAAGATGTGAGAGATGCAGCTAGGCTACACATTGGTGACACAGGCTTACTTGATTATGTACTCAAATCACTCAACAATGTGATTGTTGGAAACTGCGTTGTTCGTCGCATGGTGAATCCATCAACTAGAATCCTGGAGTACACTATTCATGATTTTGGCAAGGGGTCCAAAGCCCCTGAACCGGAGGCTGAGGTGATGGCTCATGTAGATCAACAAGTAGAAGAGGAGTCATCTTGGATGCCTGGTAATGATATTTACTGTGATGCATTGTTTTTGTACAAGAATGTGCTATTGGGTTACCCTGATTCAGAAGCAGTGGACTTGGCAGTTCAGACAGTTCTAGACAGCAGATACTTTGTGAAGGATTTTCCAGCAGTGAGGGATGATGAATTGGAGGAGCAGATATTGACATTCATTTGCCGCTTGCAACCAAATTTTGTGGACAAAAAGTATGAGATGAAAGGTCTACCATGTGGTGAGGTTGTGATGGTTCCAGTGCATGCAACAGTTGGGGACTTGAAGAGAGCTTCTGAGGCTGCACTGAGGGACACTTACTGCATAGCAGAGAGGCTTATAGTGACAGACATCAAAGAACTCATGGATGTGAGTGATGAGGAAGTGTTGTTTGGACTAATCCAGTGTGGTGTGGAGCTTTGTGTGAGGGGAATTGCTATTGATTTGTTGACCCCTTTGAAGTATCAAGGTGGATCTGATGAGTCTGAGAACTGGAAGGTGAGATGTGAATGTGGAGCTCAAGATGATGATGGGGAGAGAATGGTGGCTTGTGACATTTGTGAAGTGTGGCAGCACACTCGATGCTGTGGCATTGAGGATTCTGAGACAGTGCCACCACTGTTTGTGTGCACTGGTTGCTGTGACTCACTGGTACCTTCCTCCTCAAAGACTGAATCACCCTTTGCTGTGGATTCTGCTGATTCTTTTCTCATTTTAGAAGACCCTACCCTTTTGCTAGAATATGAGTATGCATACTAA 2133 0.4534 MSFALIEACKKRKRWPKFFRFNSFGDPGVPLSPLGPFRDNVRVFLQEAGELEDYTVSGNPLWCILLIHDKSNVMAPLYIIEEHVDRSAHPFCDHCRCVGWSGHFVSKRRYHFIIPMDNGWHKPLDEEDSLDNQKHLLHGVTHCNGYGHLLCVNGIEGGSKVLSGREIMDLWDRICTNLRARTIAVEDVSCKRSMDLRLLHGVAYGHSWFGRWGYRFSRGSFGVTEREYNEAMTTLGSLELDMIVKDLSKTKYNQEIKQMIRCYRDMSETHIISLRDLLRFMLTVKSSRAPVLKITATYSAVTAAESSSSASISRSSTKHTLPHRSNSMKEKSVRYKKFSNAVTNMDSRWPTRRLEFAAQVIVDALKANKSVKPGSGGMTRQDVRDAARLHIGDTGLLDYVLKSLNNVIVGNCVVRRMVNPSTRILEYTIHDFGKGSKAPEPEAEVMAHVDQQVEEESSWMPGNDIYCDALFLYKNVLLGYPDSEAVDLAVQTVLDSRYFVKDFPAVRDDELEEQILTFICRLQPNFVDKKYEMKGLPCGEVVMVPVHATVGDLKRASEAALRDTYCIAERLIVTDIKELMDVSDEEVLFGLIQCGVELCVRGIAIDLLTPLKYQGGSDESENWKVRCECGAQDDDGERMVACDICEVWQHTRCCGIEDSETVPPLFVCTGCCDSLVPSSSKTESPFAVDSADSFLILEDPTLLLEYEYAY 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2023 710 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 10 680 - -
Aed3g2023 710 ProSitePatterns Zinc finger PHD-type signature. 627 671 IPR019786 -
Aed3g2023 710 SMART PHD_3 626 672 IPR001965 -
Aed3g2023 710 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 612 678 IPR013083 -
Aed3g2023 710 MobiDBLite consensus disorder prediction 309 332 - -
Aed3g2023 710 CDD PHD_MMD1_like 627 671 - -
Aed3g2023 710 SUPERFAMILY FYVE/PHD zinc finger 616 677 IPR011011 -
Aed3g2023 710 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 10 680 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2023 Aed-Chr3 24268963 24271896 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2023 10 679 PHD Transcription Factor Family AT5G22260 34.034 1.23e-119 371
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2023 - - gmx:100797388 1234.94