Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2021 ATGACGGGAAAGAAAAATGTGGCGGCGGCGGTGACGGAGGAAGAGGGAGAGGAGGAGAAGCAAACGACGACGTCTTCGTCTACGTCTACGTCGTCGTCGTCGTCGTCATCGGATGAGAGAGAGTACGAGGTGCAGGACCTGCGTGACCGGCTGAAATCGTCGAGAGGGAGCAGATTCAATCTGATAGAGAATCAGTTGGGACTCTCTCTCAACTCAAAATGGAGCAAGTTCAGCCGCCAAGCGCTTCTCCATGGAATCCGAGGCTTCTCCAAGGACTTCTTTATTCATCCTGATAACAGTTGGTATCGGGCATGGACAAAATTCATATTGCTATGGGCAGTGTATTCATCCTTCTTCACCCCAATGGAGTTTGGATTTTTCCGTGGCCTGCCTGAGAATCTCTTCATTCTGGACATCATTGGACAAATAGCTTTTCTTGTGGATATTGTCTTGCGATTCTTTGTTGCTTACAGAGACAGTCAAACCTATCGTATGGTCTACAAGCGAACCCCTATTGCTCTGCGGTATCTAAAATCTGACTTCATATTTGATCTTCTTGGATGCATGCCCTGGGACATCATCTTCAAGGCTAGTGGGCGAAGAGAGGAAGTGAGGTACCTATTGTGGATCAGATTATACAGGGTGCGGAAAGTGACAGATTTTTTCCACAAGATGGAGAAGGACATACGTGTGAATTACATTATGACACGGGTTGTGAAACTGATAGTAGTTGAACTTTACTGCACCCATACAGCAGCCTGCATTTTCTACTATTTGGCTACTACACTACCTGAATCCCAAGAAGGGTACACTTGGATTGGAAGTTTAAAACTAGGTGACTTTAGTTATTCACATTTCAGAGAAATTGATCTTTGGAAGCGCTATACAACATCTCTCTACTTCGCTATTGTTACAATGGCTACAGTTGGCTATGGAGAAATACATGCAGTGAATATGAGGGAGATGATATTCATAATGGTATATGTTTCATTTGATATGATTCTTGGTGCCTATTTGATTGGTAACATGACAGCTTTGATAGTCAAGGGATCAAAGACTGAAAAGTTTAGGGACAAGATGACAGACCTTATGAAATATATGAACAGAAATAGGCTCGGAAGGGATATCCGTGAACAAATTAAAGGCCATTTAAGGTTACAGTATGAGAGTAGCTACACTGAGGCTTCTGTCATTCAGGATATCCCTGTTTCTATTCGAGCTAAGATATCCCAAACATTATATTTGCCGTACATTGAAAAGGTTTCTCTTTTTAAAGGATGCTCTGCGGAATTCATCAATCAGATTGTTATTAGGCTCCATGAGGAGTTCTTTCTTCCAGGGGAAGTTATAATGGAACAAGGAAATGTTGTAGATCAACTATATTTTGTCTGTCATGGAGTACTGGAGGAAATAGGAACAGGTACAGATGGGACTGAAGAAACTGTTTCACTTCTGCAACCTAACAGTTCATTCGGAGAAATATCTATTCTTTGCAACATTCCTCAGCCATATACTGTCCGTGTTTGTGAACTAAGTAGACTCCTGCGACTTGATAAACAATCATTTTCAAATATCCTAGACATATACTTTTATGATGGAAGGAAAGTATTAAACAACCTTCTAGAGGGAAAAGAGTCTTTTCGAGATAAGCAATTGGAGTCAGACATCACATTTCATATTGGAAAGCAAGAAGCTGAACTTTCTTTGAAGGTCAATAGTGCATCTTTCAATGGGGATCTGTATCAGCTAAAAGGTTTAATTCGAGCTGGAGCTGATCCCAACAAGACAGATTATGATGGAAGGTCACCTTTGCATCTTGCAGCATGTAAAGGATATGAAGATATCATACTTTTCCTTATTCATGAACATGTAGATGTCAATATTAAAGATAACTTTGGGAACACACCCTTACTTGAAGCAGTTAAGAATGGACATGATAGGGTTGCTTCTTTACTTGTTAGAGAAGGGGCTTCTTTGAATATCGAAAATGCCGCTAGTTTTTTATGTACAGCAGTTGCAAGGGGAGATTCAGAATATCTTAAAAGACTTTTATCCAATGGCATGGATCCTAACTTAAAAGATTATGATTACCGAAGTCCTCTTCACATTTCTGCAGCTGAAGGTTTATACTTCATGGCAAAGTTGCTATTAGAAGCCGGAGCTAGTGTTTTTTCCAAAGACAGATGGGGAAATACCCCTCTTGATGAAGCCCGGATGTGTGGAAATAAGAATCTGATCATGCTACTGGAAGATGCAAAAACTTCTCAACTGTCAGAATTCCCATATCTCTCTCAAGAATTTACAGATAAAATGCACCCAAAGAAGTGCACAGTGTTCCCTTTCCACCCTTGGGATCCGAAAGATAACAGAAGACATGGACATGTATTATGGATTCCACACTCCATGGAAGAGCTAATCAAAACAGCAACAGAACAAATAGAACTTTCTGGCGATTATTTTATTTTATCAGAAGATGCTGGTAAAATTACTGATGTGGACATGATTAAGGATGGTCAAAAGTTGTATTTAGTCCATAAAACACATTAG 2547 0.4032 MTGKKNVAAAVTEEEGEEEKQTTTSSSTSTSSSSSSSDEREYEVQDLRDRLKSSRGSRFNLIENQLGLSLNSKWSKFSRQALLHGIRGFSKDFFIHPDNSWYRAWTKFILLWAVYSSFFTPMEFGFFRGLPENLFILDIIGQIAFLVDIVLRFFVAYRDSQTYRMVYKRTPIALRYLKSDFIFDLLGCMPWDIIFKASGRREEVRYLLWIRLYRVRKVTDFFHKMEKDIRVNYIMTRVVKLIVVELYCTHTAACIFYYLATTLPESQEGYTWIGSLKLGDFSYSHFREIDLWKRYTTSLYFAIVTMATVGYGEIHAVNMREMIFIMVYVSFDMILGAYLIGNMTALIVKGSKTEKFRDKMTDLMKYMNRNRLGRDIREQIKGHLRLQYESSYTEASVIQDIPVSIRAKISQTLYLPYIEKVSLFKGCSAEFINQIVIRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEIGTGTDGTEETVSLLQPNSSFGEISILCNIPQPYTVRVCELSRLLRLDKQSFSNILDIYFYDGRKVLNNLLEGKESFRDKQLESDITFHIGKQEAELSLKVNSASFNGDLYQLKGLIRAGADPNKTDYDGRSPLHLAACKGYEDIILFLIHEHVDVNIKDNFGNTPLLEAVKNGHDRVASLLVREGASLNIENAASFLCTAVARGDSEYLKRLLSNGMDPNLKDYDYRSPLHISAAEGLYFMAKLLLEAGASVFSKDRWGNTPLDEARMCGNKNLIMLLEDAKTSQLSEFPYLSQEFTDKMHPKKCTVFPFHPWDPKDNRRHGHVLWIPHSMEELIKTATEQIELSGDYFILSEDAGKITDVDMIKDGQKLYLVHKTH 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2021 848 Pfam KHA, dimerisation domain of potassium ion channel 774 843 IPR021789 -
Aed3g2021 848 Gene3D - 562 664 IPR036770 -
Aed3g2021 848 SUPERFAMILY cAMP-binding domain-like 351 540 IPR018490 -
Aed3g2021 848 MobiDBLite consensus disorder prediction 1 42 - -
Aed3g2021 848 SUPERFAMILY Ankyrin repeat 572 751 IPR036770 -
Aed3g2021 848 Gene3D Helix hairpin bin 350 406 - -
Aed3g2021 848 CDD CAP_ED 423 537 IPR000595 -
Aed3g2021 848 Gene3D - 105 349 - -
Aed3g2021 848 MobiDBLite consensus disorder prediction 22 38 - -
Aed3g2021 848 SMART ANK_2a 729 758 IPR002110 GO:0005515
Aed3g2021 848 SMART ANK_2a 632 661 IPR002110 GO:0005515
Aed3g2021 848 SMART ANK_2a 599 628 IPR002110 GO:0005515
Aed3g2021 848 SMART ANK_2a 696 725 IPR002110 GO:0005515
Aed3g2021 848 SMART ANK_2a 663 692 IPR002110 GO:0005515
Aed3g2021 848 PANTHER POTASSIUM CHANNEL SKOR-LIKE 34 847 - -
Aed3g2021 848 PANTHER POTASSIUM CHANNEL AKT1 34 847 IPR045319 GO:0005249|GO:0006813
Aed3g2021 848 ProSiteProfiles Ankyrin repeat region circular profile. 696 728 - -
Aed3g2021 848 SUPERFAMILY Voltage-gated potassium channels 96 348 - -
Aed3g2021 848 Gene3D - 665 759 IPR036770 -
Aed3g2021 848 Pfam Ion transport protein 103 348 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Aed3g2021 848 ProSiteProfiles Ankyrin repeat profile. 663 695 IPR002110 GO:0005515
Aed3g2021 848 ProSiteProfiles Ankyrin repeat region circular profile. 599 631 - -
Aed3g2021 848 ProSiteProfiles cAMP/cGMP binding motif profile. 423 543 IPR000595 -
Aed3g2021 848 ProSiteProfiles Ankyrin repeat profile. 599 631 IPR002110 GO:0005515
Aed3g2021 848 ProSiteProfiles KHA domain profile. 775 848 IPR021789 -
Aed3g2021 848 PRINTS Ankyrin repeat signature 712 726 IPR002110 GO:0005515
Aed3g2021 848 PRINTS Ankyrin repeat signature 600 615 IPR002110 GO:0005515
Aed3g2021 848 ProSiteProfiles Ankyrin repeat profile. 696 728 IPR002110 GO:0005515
Aed3g2021 848 ProSiteProfiles Ankyrin repeat profile. 632 664 IPR002110 GO:0005515
Aed3g2021 848 SMART cnmp_10 423 541 IPR000595 -
Aed3g2021 848 Gene3D Jelly Rolls 407 546 IPR014710 -
Aed3g2021 848 Pfam Ankyrin repeats (3 copies) 574 662 IPR002110 GO:0005515
Aed3g2021 848 Pfam Ankyrin repeats (3 copies) 669 750 IPR002110 GO:0005515
Aed3g2021 848 Pfam Cyclic nucleotide-binding domain 443 527 IPR000595 -
Aed3g2021 848 PRINTS EAG/ELK/ERG potassium channel family signature 339 348 IPR003938 GO:0005249|GO:0006813|GO:0016020
Aed3g2021 848 PRINTS EAG/ELK/ERG potassium channel family signature 295 312 IPR003938 GO:0005249|GO:0006813|GO:0016020
Aed3g2021 848 PRINTS EAG/ELK/ERG potassium channel family signature 138 148 IPR003938 GO:0005249|GO:0006813|GO:0016020
Aed3g2021 848 PRINTS EAG/ELK/ERG potassium channel family signature 247 257 IPR003938 GO:0005249|GO:0006813|GO:0016020
Aed3g2021 848 ProSiteProfiles Ankyrin repeat region circular profile. 632 663 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2021 Aed-Chr3 24250638 24257481 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2021 642 749 Ion Channels AT5G37500 31.159 2.25e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2021 K21867 - gmx:100814385 1539.24