Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2010 ATGAAACCAAACTTTGATCTTGAAGTGGAGGCATGTGCAGAATATGAATCTGAGGTTAGCAGCCAGGTTGCTTCCAATGTATCTATTCAAGAAGCCTCTACAGGTCCTTGTAGTGACAGCCTCACTAACATTTCCAACGTCACAAATCCAATAGGGCTTAATCCTGATTCAGATACTATTTCACTTGACTTAACTCTCAACTTCAAGAACAGTGAACCAGGGGGAAGAGATTCAATAGGATTTTCATTCTCAAGCACTAGTGAGAGCAGCAATGAACCTGCCTTTCAAACTACAGCAGCGACTGTTCCACGAGTCTTCTCTTGCAATTACTGCCAGCGCAAGTTTTTCAGCTCTCAGGCTCTTGGTGGACACCAGAATGCACACAAGAGAGAAAGGACATTAGCAAAAAGGGCAATGAGAATGGGATTTTTCTCTGAAAGGTATGCCAATATAGCATCTCTCCCTCTGCATGGTTCTTTCAGGTCCTTAGGCATAAAGGCACACTCTTCACTTCACCATGGTTTCTCACCAACAATGAGGCCTCCTGAGATGAAAAGCAATGCAAGATTTGATCAAGGGTATGTTGGCCTCCCAATTTTCTTGGAGGATGATGAGTCAGATTTGTTGTGGCCAGGTAGTTTTCGGCAGGTAGCTGAGGCTGGTGATAGTCATCAGAATTTCATACTGACTGGAAGTTCCAATTTGAGTTTTTCTGGGGTGAATGAGAATCCACCTATAGACATAGAGAACTCAACACCAGATTTGACTTTGAAACTTTGA 780 0.4308 MKPNFDLEVEACAEYESEVSSQVASNVSIQEASTGPCSDSLTNISNVTNPIGLNPDSDTISLDLTLNFKNSEPGGRDSIGFSFSSTSESSNEPAFQTTAATVPRVFSCNYCQRKFFSSQALGGHQNAHKRERTLAKRAMRMGFFSERYANIASLPLHGSFRSLGIKAHSSLHHGFSPTMRPPEMKSNARFDQGYVGLPIFLEDDESDLLWPGSFRQVAEAGDSHQNFILTGSSNLSFSGVNENPPIDIENSTPDLTLKL 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2010 259 Gene3D Classic Zinc Finger 85 150 - -
Aed3g2010 259 ProSitePatterns Zinc finger C2H2 type domain signature. 108 128 IPR013087 -
Aed3g2010 259 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 133 IPR013087 -
Aed3g2010 259 PANTHER ZINC FINGER PROTEIN 3-RELATED 1 259 - -
Aed3g2010 259 PANTHER ZINC FINGER PROTEIN JAGGED 1 259 IPR045320 GO:0003700
Aed3g2010 259 SUPERFAMILY beta-beta-alpha zinc fingers 104 133 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2010 Aed-Chr3 24163323 24164102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2010 1 259 C2H2 Transcription Factor Family AT1G66140 44.599 1.78e-49 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed3g2010 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2010 - - gmx:100794851 474.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed7g2204 7 24600483 24601256 Aed3g2010 3 24163323 24164102 PCT