Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2008 ATGACCTTGGAGGGGATTTTCATTGAGCCCACCTCAACAACCACTGCTCCTGATCTTTCTCTTCACATAAGCCCCCCAAGCATCTCTTCTAATTCCTTGATTTCCAATTATGAACCCCAAGGAAGAACTACTACTACTGTGTCTTCTCAAGCCCACACAGAACTCTCTCTTGGAAGAAATAATTTCCCTTCTGAAGCACCAGCACCAGCACCAACACCAACACCACACAACCCTTATTACCAAAGCCAAACCCATTTCCATCATCTTCATCACCACCACAACAACACCAGTGCTAGTCCTACTACTACAGCAAGTGGTGTTACAAGCACTACCACTCCCTTGAATCACATAAACTATGGAGTTTCATTGCTTGATGTGTCATCATCAGAGGGCTTGAGGCCAATCAAGGGGATTCCGGTCTATCACAACCGTTCATTCCCTTTCGTAGCCATGGACAACAACAAGGATCATCATCATCATCATCATCAACATCAACACCATCACAAGATGTGCTTATATAATAACAATAATAACAATAACAATAGTCACATGCCTTCTTATCATCCCTCTCTCTCTCCCTCCACACTAGCTACTCCTTCACCTTCACCTTACTTTGTGGATCCCATGTCCCTCCTGAGCAACGCCTCCACCGTGGCGGCGTGTAGGGCAGCCACAAGGTTTAATGGGTTCTCTGCAGGCGAACCTTTCAAATCTCATCATCCATTGCACCAATATGGGGTTGGCCCTTCAGAAGTTTCTTCAGCTGGGTTCATGAGATCAAGGTTTCTGCAGAAACTTCCCAACAAGAGGAGCATGAGAGCACCCAGAATGAGGTGGACAAGCACCCTCCATGCGAGATTCGTTCATGCCGTTGAACTTCTTGGTGGCCATGAAAGAGCTACTCCAAAATCAGTTCTTGAGCTGATGGATGTGAAGGATCTAACACTAGCTCATGTGAAGAGCCATTTGCAGATGTATCGAACTGTTAAGACCACTGACAAACCTGCAGCATCTTCAGGCCATTCAGATGGGTCTGGAGAGGATGATTTGTCTCCGATGGGTAGCACCGCCGACCGCGGCAGTCTCCGGCAATTCCCCAACCCCAGAGGGCGGCCGGAATGGGCAGCACAACAAGACATGGACTACTCTTCCAGCACCACTCTATGGAGTAATTCTTCAAGTTGTGGAGAGTCACGGCTAAGACCTAGTTCTAACGACATAGATGGTCTCAGATCACCTATCCTCCATTCACAAACAATATCAGGATCAGGGCATCAAATTCAGGAGTGTGATTCAACACAACTCATGAAGAACAACACGCCAGGTTCTAATTTGGAGTGCAAGAATCCATGCTTGGAATTCACATTAGGAAGACCACATTGGGATGGCAAAGACCAAGACCAAGCCTAA 1410 0.4688 MTLEGIFIEPTSTTTAPDLSLHISPPSISSNSLISNYEPQGRTTTTVSSQAHTELSLGRNNFPSEAPAPAPTPTPHNPYYQSQTHFHHLHHHHNNTSASPTTTASGVTSTTTPLNHINYGVSLLDVSSSEGLRPIKGIPVYHNRSFPFVAMDNNKDHHHHHHQHQHHHKMCLYNNNNNNNNSHMPSYHPSLSPSTLATPSPSPYFVDPMSLLSNASTVAACRAATRFNGFSAGEPFKSHHPLHQYGVGPSEVSSAGFMRSRFLQKLPNKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKPAASSGHSDGSGEDDLSPMGSTADRGSLRQFPNPRGRPEWAAQQDMDYSSSTTLWSNSSSCGESRLRPSSNDIDGLRSPILHSQTISGSGHQIQECDSTQLMKNNTPGSNLECKNPCLEFTLGRPHWDGKDQDQA 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2008 469 MobiDBLite consensus disorder prediction 95 114 - -
Aed3g2008 469 SUPERFAMILY Homeodomain-like 272 328 IPR009057 -
Aed3g2008 469 Gene3D - 274 331 - -
Aed3g2008 469 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 466 - -
Aed3g2008 469 MobiDBLite consensus disorder prediction 331 411 - -
Aed3g2008 469 MobiDBLite consensus disorder prediction 378 401 - -
Aed3g2008 469 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 275 328 IPR006447 GO:0003677
Aed3g2008 469 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 466 IPR044847 GO:0000976|GO:0006355|GO:0010158
Aed3g2008 469 MobiDBLite consensus disorder prediction 1 60 - -
Aed3g2008 469 MobiDBLite consensus disorder prediction 1 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2008 Aed-Chr3 24151674 24158425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2008 1 464 G2-like Transcription Factor Family AT5G16560 38.430 5.03e-70 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Aed3g2008 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2008 - - gmx:100812229 650.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g2008 3 24151674 24158425 Aed3g2008 3 24151674 24158425 ECH