Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1998 ATGGCGATACAAGGCCAAAATGCATTTACTAGATCACGTGGTGGTCTTCCAATTGGAGATGGAATATCTTTGAATTCTGGTGTGCATTCTGATGCAGATATTCCACTACATGATCAGTTTTCTTGTGGAAATGACTATGCCTTGAAGGTAAGGAAACCATATACTATCACAAAGCAGAGAGAGAGGTGGACAGATGAAGAACATAAGAAGTTCCTTGAAGCCTTAAAGCTATATGGCAGGGCCTGGCGACGAATTGAAGAACATGTTGGCACAAAGACTGCTGTTCAGATTCGAAGTCATGCTCAGAAGTTTTTTTCTAAGATTCTTCGAGAGTCTAGTGGGAGCAGTACAATCTTGGAGGAATCAATCGAAATTCCGCCTCCACGACCAAAACGAAAGCCAATTCATCCATACCCTCGCAAACTAGTTGAGATTCCAAAGAAAGAAATTTGCAACTCTTTAGAACACCCACTGAGGTCTAATTCTCTTAAGTCATCAGACTTTGGCCAAGAAAACAATTCTCCCAAGTCAGTGTTATCTACAGTTGTTTCAGAAACTCTTGGTTCCTCCTATTCAGATACACCTACTAGAAGTTTGTCACTAACCTCCTCATCCATTAGTGGTGTCCCCACAAATAACAGATTTCCACTTGCTGAGCCCAAAACATCATTTGAGGAAGAAGGGTCTCCACGAAGTGCTTCTCATGATGAGCAACCTCTTGTGAAACTGGAGCTTTTTCACAAAGAAAGTGTTTCTACCAAAGATGATGTTGCAGAAGAATCATCTGGTCGAACTCTCAAACTTTTTGGGACTACTCTACTGGTAACAGATACATGCAAACCTTCTTCTCCAACAACAGAGCGATGCAAACCAATGCCTATGTATCTTGTGCAACTTCAGAATGGTTGTTCAGATATTACAGAAAGTCCTGCAAGTATTGTACCTAGGTGGGTTTTCCCCCACAATGCACCATTCATGCCATTGCACTTTGAGCCAAAAGGGAATCAATTATACTCCAACCATGGAGAGTTTGAACAAAAAGAAGTTCAAAAGGAAGGATCTTGGAGTACTAGTTCAAACACTAGTTCAATTAATGATGGAGATAACACTAGTTCAAACACTAGGAAGGATCATTGTGACCACTTTCTTGGTCACAATGCACCAATTGAAACATCAACTATATCTGAGCAAAGGGTAAGGCCTAAAACCTATGGGAAAGGGTTTGTACCATATAAAAGATGCATGGCAGAGAGGGAAAACCAGTACTCATCAGTATTTTATGAGAAGAGGGAAGAGCAACGTATCAAGCTTTCCTTATAG 1320 0.4083 MAIQGQNAFTRSRGGLPIGDGISLNSGVHSDADIPLHDQFSCGNDYALKVRKPYTITKQRERWTDEEHKKFLEALKLYGRAWRRIEEHVGTKTAVQIRSHAQKFFSKILRESSGSSTILEESIEIPPPRPKRKPIHPYPRKLVEIPKKEICNSLEHPLRSNSLKSSDFGQENNSPKSVLSTVVSETLGSSYSDTPTRSLSLTSSSISGVPTNNRFPLAEPKTSFEEEGSPRSASHDEQPLVKLELFHKESVSTKDDVAEESSGRTLKLFGTTLLVTDTCKPSSPTTERCKPMPMYLVQLQNGCSDITESPASIVPRWVFPHNAPFMPLHFEPKGNQLYSNHGEFEQKEVQKEGSWSTSSNTSSINDGDNTSSNTRKDHCDHFLGHNAPIETSTISEQRVRPKTYGKGFVPYKRCMAERENQYSSVFYEKREEQRIKLSL 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1998 439 Pfam Myb-like DNA-binding domain 60 103 IPR001005 -
Aed3g1998 439 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 109 IPR017930 -
Aed3g1998 439 ProSiteProfiles SANT domain profile. 58 109 IPR017884 -
Aed3g1998 439 SMART sant 59 107 IPR001005 -
Aed3g1998 439 MobiDBLite consensus disorder prediction 220 240 - -
Aed3g1998 439 MobiDBLite consensus disorder prediction 345 376 - -
Aed3g1998 439 SUPERFAMILY Homeodomain-like 54 108 IPR009057 -
Aed3g1998 439 MobiDBLite consensus disorder prediction 351 370 - -
Aed3g1998 439 PANTHER PROTEIN REVEILLE 7-RELATED 35 426 - -
Aed3g1998 439 ProSiteProfiles Myb-like domain profile. 55 105 IPR001005 -
Aed3g1998 439 PANTHER SWI/SNF COMPLEX-RELATED 35 426 - -
Aed3g1998 439 Gene3D - 62 108 - -
Aed3g1998 439 MobiDBLite consensus disorder prediction 189 218 - -
Aed3g1998 439 CDD SANT 62 105 IPR001005 -
Aed3g1998 439 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 58 107 IPR006447 GO:0003677
Aed3g1998 439 MobiDBLite consensus disorder prediction 189 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1998 Aed-Chr3 24045637 24054527 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Aed3g1998 Myb_DNA-binding 1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1998 - - gmx:778060 629.402