Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1982 ATGCCTGCTGTCACATCAGGTCGAAACCAACGGCCAGGATTGAATTGTACGGAAGATCGAACGGTTCCGATTCTTTTTGTCGAACACACAGTCTCTTTCTCTCTCCTCTGCACCCCATGTCCAGCTTGGTCGGGACCCCCTTATATATGGCAAAGACCCTTCCTTTACGCTCTCTCTCACTTCACTCTTCTTCATCTTCAGCTTGTTCAGTTTCTGGCTCATGGCGATCTCGGAGGACGTGCCATCCTTGAAGCTGTTGTTCGGTTCCTGGGTCCCACTTGTGGCTTTTGGTGCATTGGCAAGTGGGAGGGGAACATGGGGGAATGCAATAATGATAATTACAATAATAATGGGTTTGGGGAAATTGAGGATGGTGGCTCTGAGCTAGGGGGAAAGCTTGATATGAAGCTTTCAACATCAGGGTTGGGTCAGCAGGGACATGAAGGAGGGGAGAAGAAGTGTTTGAATTCCGAGCTATGGCATGCATGCGCGGGTCCCTTGGTGTCCCTACCAACTGCAGGGACTCGTGTGGTTTATTTCCCTCAAGGTCATAGCGAGCAGGTTGCTGCCACAACCAACAGAGAAATTGATGGTCACATACCCAATTACCCAAGTTTGCCACCCCAGTTGATTTGCCAACTTCACAATGTTACAATGCATGCAGATGTTGAAACAGATGAAGTGTATGCTCAAATGACGCTGCAGCCGCTGACTCCGCAAGAGCAGAAGGATACGTTTCTTCCCATGGAGTTGGGCATTCCAAGCAAGCAGCCCTCGAATTATTTTTGCAAGACGCTAACGGCAAGTGACACCAGCACACATGGAGGGTTCTCTGTTCCTCGTCGTGCAGCTGAGAAAGTTTTCCCTCCTCTGGATTTCTCACAACAACCGCCTGCGCAAGAACTAATTGCTAGGGATCTCCATGACGTTGAGTGGAAGTTTCGCCATATTTTTCGAGGAATGAAAAGAATCAGCTTCTTTTGGGAATACGTCGAGCCAATCGGCCACAAACTGTCATGCCATCCTCTGTTCTATCCAGTGATAGTATGCACATTGGGCTTCTTGCAGCTGCTGCTCACGCTGCAGCAACTAATAGCTGCTTTACAGGCTAGTCCATCTGAGTTTGTCATACTGCTTTCAAAATATATCAAAGCTGTGTACCATACACGTGTTTCTGTTGGTATGCGTTTTAGGATGCTTTTCGAGACTGAAGAATCAAGTGTCCGCAGGTACATGGGTACAATAACTGGCATAAGTGACCTGGATCCTGTTCGTTGGCAGAATTCTCATTGGCGGTCTGTTAAGGTTGGTTGGGATGAATCAACTGCAGGAGAGAGACAGCCACGGGTATCATTATGGGAAATTGAGCCTTTAACAACATTTCCAATGTATCCATCACTGTTTCCCCTCAGATTGAAGCGGCCATGGCATCCTGGCACCACTTCTTTTCATGATGGTAGAGAGGAAGCAACTAATGGGCTAATGTGGCTGAGGGGTGGACCTGGAGACCAAGCTCTCAATTCCCTGAATTTTCAAGGTTCTGGTTTGTTGCCATGGATGCAGCAGAGAATGGATCCAACTTTGCTTGGAAATGATCATAATCAACAGTACCAAGCCATGTTTGCATCTGGTTTGCAGAACTTAGGGAGTGGAGATATAATGAGACAACAAATGATGAATTTTCAACAGCCTTTCAATTATCTTCAACAATCAGGAAATCCCAATCCTCCTTTGCAGCTTCAGCAACCGCAAACAATTCAGCAATCCATATCTTCTAATAATATCCTACAGCCACAAGGTCAAGTAATGGCAGAGAACCTGTCTCAGCACCTCCTTCAGAAATCGCACAACAATCGAGAAGACCAAACACAGCAGCAGCACACTTACCAAGATACGGTTTTACTTCAAAGTGATCAGCTCCATCAGAGGCAACACTCCGGTTTGCCTTCACCATCATATTCAAAATCAGATTTCATAGATTCAAGCATGAAGTTCTCTGCTTCAGTTTCACCAGGACAAAACATGCTTGGTTCACTTTGTCCTGAAGGGAGTGGCAATCTCTTGAATTTATCCAGAAGTGGTCAGTCCATGCTGACTGAACAGTTACCTCAACAATCATGGGCCTCAAAGTTCACACCATTGCAGGTTAATGCTTTCGGAAACTCAATGCCACATGTGCAGTATTCTGGAAAGGACACTGCAATGGTGCCACCACATTGTAACTCAGACACCCAAAATCCTATTCTATTTGGTGTCAACATTGATTCATCTGGCCTTCTGCTCCCTACCACTGTCCCTCGTTATACTACTGCGTCAACTGATACTGATGCATCAGCAATGCCATTAGGAGAGTCTGGATTCCAGGCTCCTCTATATCCTTGCGTGCAAGATTCATTGGAGTTGTTGCCAAGTGCAGGGCAAGTTGACCCCCAGAACCAGACACGAACATTTGTCAAGGTTTACAAATCAGGGTCAGTAGGGCGCTCACTCGACATCTCCCGGTTCAGCAGTTATCATGAGCTGCGGGAGGAGTTGGCGCAGATGTTTGGTATTGAGGGGAAATTAGAAGACCCTCTTAGATCAGGCTGGCAGCTTGTGTTCGTCGACAGGGAGAACGATGTTCTTCTCCTTGGAGACGATCCGTGGGAATCATTTGTCAATAATGTTTGGTATATCAAAATACTTTCACCTGAAGATATCCAGAAAATGGGAGAACAAGCAGTGGAATCCCTTGGTCCAAGTTCAGGACAGAGGCTGAATAGCACTGGTGCAGATTCTCATGACATTGTTTCTGGACTTCCATCACTAGGCTCCCTTGAATACTGA 2826 0.4646 MPAVTSGRNQRPGLNCTEDRTVPILFVEHTVSFSLLCTPCPAWSGPPYIWQRPFLYALSHFTLLHLQLVQFLAHGDLGGRAILEAVVRFLGPTCGFWCIGKWEGNMGECNNDNYNNNGFGEIEDGGSELGGKLDMKLSTSGLGQQGHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNREIDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPMELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGMKRISFFWEYVEPIGHKLSCHPLFYPVIVCTLGFLQLLLTLQQLIAALQASPSEFVILLSKYIKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGTTSFHDGREEATNGLMWLRGGPGDQALNSLNFQGSGLLPWMQQRMDPTLLGNDHNQQYQAMFASGLQNLGSGDIMRQQMMNFQQPFNYLQQSGNPNPPLQLQQPQTIQQSISSNNILQPQGQVMAENLSQHLLQKSHNNREDQTQQQHTYQDTVLLQSDQLHQRQHSGLPSPSYSKSDFIDSSMKFSASVSPGQNMLGSLCPEGSGNLLNLSRSGQSMLTEQLPQQSWASKFTPLQVNAFGNSMPHVQYSGKDTAMVPPHCNSDTQNPILFGVNIDSSGLLLPTTVPRYTTASTDTDASAMPLGESGFQAPLYPCVQDSLELLPSAGQVDPQNQTRTFVKVYKSGSVGRSLDISRFSSYHELREELAQMFGIEGKLEDPLRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDIQKMGEQAVESLGPSSGQRLNSTGADSHDIVSGLPSLGSLEY 941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1982 941 Gene3D - 811 904 - -
Aed3g1982 941 Pfam AUX/IAA family 812 899 IPR033389 -
Aed3g1982 941 ProSiteProfiles PB1 domain profile. 815 899 IPR000270 GO:0005515
Aed3g1982 941 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 369 926 IPR044835 GO:0003677|GO:0006355|GO:0009725
Aed3g1982 941 Gene3D - 390 462 - -
Aed3g1982 941 MobiDBLite consensus disorder prediction 908 927 - -
Aed3g1982 941 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 135 322 IPR044835 GO:0003677|GO:0006355|GO:0009725
Aed3g1982 941 SUPERFAMILY DNA-binding pseudobarrel domain 246 321 IPR015300 -
Aed3g1982 941 PANTHER AUXIN RESPONSE FACTOR 135 322 - -
Aed3g1982 941 Gene3D - 260 331 IPR015300 -
Aed3g1982 941 PANTHER AUXIN RESPONSE FACTOR 369 926 - -
Aed3g1982 941 MobiDBLite consensus disorder prediction 566 587 - -
Aed3g1982 941 Pfam Auxin response factor 370 435 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Aed3g1982 941 CDD B3_DNA 261 327 IPR003340 GO:0003677
Aed3g1982 941 SUPERFAMILY CAD & PB1 domains 812 889 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1982 Aed-Chr3 23942227 23952918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1982 232 912 B3 DNA Binding Superfamily AT5G37020 58.985 0.0 757
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1982 - - gmx:100780393 1410.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g1982 3 23942227 23952918 Aed3g1982 3 23942227 23952918 ECH
Aed4g2106 4 24062585 24070489 Aed3g1982 3 23942227 23952918 PCT