Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1978 ATGGCCTTGGCTACAAACAATATTTCAGCCAAGTCTGCTCAAATTGGAGAAGGAAGCTATGGGAAGGTTTATAAAGGTGTTCTTCCTGATGGCACTGTTGTTGCCATAAAACGTGCACAGGAGGGTTCTCTGCAAGGTGAGAGGGAGTTCCTTACAGAAATAGAATTGCTATCAAGGACATTCAAGCGCAGGAACGGAGGTCGCAACAAGCACGGCCGCGGCCACACCAAATTCATCCGATGCTCCAACTGCGGCAAATGCTGCCCTAAGGACAAGGCCATCAAGAGGTTTCTGGTGAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAACAATACACACTTCCGAAACTGTATGTGAAGATGCAGTACTGTGTTTCCTGTGCTATCCACTCTCATGTTGTGAGGGTTCGTTCAACCACCGATAGGAGGAAGCGTGACCCTCCACAGCGTTTCATCAGGCGCAGGGATGATGCACCAAGGCCCGGTCAGCCTGGTCAAGCACCTCGTCCTGCAGGCACTGGACCACCACCTGTCCGAACCTAA 567 0.5097 MALATNNISAKSAQIGEGSYGKVYKGVLPDGTVVAIKRAQEGSLQGEREFLTEIELLSRTFKRRNGGRNKHGRGHTKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYEQYTLPKLYVKMQYCVSCAIHSHVVRVRSTTDRRKRDPPQRFIRRRDDAPRPGQPGQAPRPAGTGPPPVRT 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1978 188 ProSitePatterns Ribosomal protein S26e signature. 131 138 IPR000892 GO:0003735|GO:0005840|GO:0006412
Aed3g1978 188 SUPERFAMILY Protein kinase-like (PK-like) 13 59 IPR011009 -
Aed3g1978 188 MobiDBLite consensus disorder prediction 144 168 - -
Aed3g1978 188 PANTHER 40S RIBOSOMAL PROTEIN S26 60 188 IPR000892 GO:0003735|GO:0005840|GO:0006412
Aed3g1978 188 Pfam Ribosomal protein S26e 60 164 IPR000892 GO:0003735|GO:0005840|GO:0006412
Aed3g1978 188 ProSitePatterns Protein kinases ATP-binding region signature. 15 37 IPR017441 GO:0005524
Aed3g1978 188 MobiDBLite consensus disorder prediction 144 188 - -
Aed3g1978 188 Gene3D Ribosomal protein S26e 63 172 IPR038551 -
Aed3g1978 188 MobiDBLite consensus disorder prediction 171 188 - -
Aed3g1978 188 Gene3D Phosphorylase Kinase; domain 1 1 62 - -
Aed3g1978 188 PANTHER 40S RIBOSOMAL PROTEIN S26 60 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1978 Aed-Chr3 23926835 23931595 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1978 60 174 Cytoplasmic Ribosomal Protein Gene Family AT3G56340 82.609 3.17e-67 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1978 K02976 - gmx:100781822 218.394