Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1967 ATGCTCGCTGCTGCTGCTTCAGCTTCTAGACACCTTCTTCAACGCGATGCAAGCATCGGTGTTTGCAGTGGCAGTGGCAATCGACAGAGTTCAACTGTGGATGGGCGAGCATTGTTCTCGACTTCAACTAAAACTGATGATGGAAGTCAGAGCCAAAAGGCTGCTGCTTCCACCATTGGTAAATCATCACCACCAACACCTGGTGGGCAAGTTGCTGACGTGAAGATCCTTCGCACGCTTGCCAGTTACTTGTGGATGAAAGATAATCTTGAATTTCGGGTTCGGATTGTTGCTGCGTTGGGTTTGCTTGTTGGGGCTAAGATTTTGAATGTTCAGGTGCCTTTCTTGTTCAAGCTGGCAGTTGATTCGTTGGCGGCTGCCACGGGAAGTGCAGGTGCTCTTGCTTCAAATTCAAGTGGGTTGGCTCTTTTCGCAACCCCTGTGGCAGTGTTGATTGGATATGGGATTGCACGGTCAGGAGCTTCTGCTTTCAATGAACTGCGGACTGCTATATTTTCTAAGGTTGCACTGCGAACAATTCGATTAGTATCAAGAAAGGTCTTCTCACATTTGCATGACCTTGATCTTCGGTATCATCTAAGCCGAGAAACTGGTGCATTAAGTAGAATAATTGATCGTGGTAGTCGTGGAATAAGTTTCATTCTCTCCTCTATGGTGTTCAATGTAGTACCCACCATATTAGAGATATCTTTGGTAACAGGTATACTGGCCTACAAATTTGGAGCTCCGTTTGTGCTGATTACTTCCTTATCAGTTGCGGCTTATGTTACTTTTACACTGACTATCACACAGACTGTCAAATATTTTAATAATGAAGTTTATGAAGCTGATAACTATGACAAGTACCTAAAAAGGTATGAGGATGCTGCTCTGAAAACCCAACGCAGTCTTGCCTTGTTGAACTTCGGTCAAAATGTTATATTTAGTACTGCTCTTTCATCAGCAATGGTGCTTTGCTCTCATGGGATCATGGATGGCACAATGACAGTTGGTGATTTGGTAATGGTGAATGGGCTTCTCTTCCAACTATCTCTTCCACTCAATTTCCTTGGTAGTGTTTATCGTGAAACTATTCAGAGTCTAGTTGACATGAAGTCCATGTTTCAGTTACTTGAGGAAAGAGCAGACATTAGGGATAAAGAAAATGCAAAGCCTTTGAGATTCAATGGGGGGAGAATCCAATTTGAGAATGTACATTTTAGTTACCTCACAGAAAGAAAGATACTTGATAAAATATCATTTGCTGTGCCAGCTGGTAAAAGTGTTGCAATTGTTGGGACTAGTGGAAGTGGAAAATCAACCATTCTTAGATTGCTATTCAGATTCTTCGATCCTCATTCTGGAAGTATAAAGATAGATGATCAAGATATTCGGGAGGTAACCCTTGAGAGTTTGCGAAAATCCATTGGTGTCGTTCCACAAGATACTGTACTTTTCAATGATACAATATATCATAACATTCACTATGGTCGGCTTTCTGCAACGGAAGAGGAGGTCTATGAAGCTGCTCAGCAAGCAGCAATTCATAACACTATCATGAGTTTTCCTGATAAATATTCAACTGTTGTGGGAGAGCGAGGGCTAAAGTTAAGTGGTGGTGAGAAGCAACGTGTTGCCCTAGCTCGTGCATTCTTAAAAGCGCCTGCAATACTGTTGTGTGATGAAGCTACAAGTGCTCTTGACAGCACAACCGAAGCAGAGATTTTAAGTGCGTTAAAGTCCGTAGCAAATAATCGGACTTCCATATTCATTGCTCACAGGCTTACCACTGCAATGCAGTGTGACGAGATCATTGTTTTGGAAAATGGGAAGGTGATTGAGCAAGGACCCCATGAAGTGCTCTTATCAAAAGCAGGAAGATATGCACAGTTGTGGGGACAGCAAAATAACACTGTTGATGCAATTGATACAGCCATTAAGCTAGGAGCATAA 1953 0.425 MLAAAASASRHLLQRDASIGVCSGSGNRQSSTVDGRALFSTSTKTDDGSQSQKAAASTIGKSSPPTPGGQVADVKILRTLASYLWMKDNLEFRVRIVAALGLLVGAKILNVQVPFLFKLAVDSLAAATGSAGALASNSSGLALFATPVAVLIGYGIARSGASAFNELRTAIFSKVALRTIRLVSRKVFSHLHDLDLRYHLSRETGALSRIIDRGSRGISFILSSMVFNVVPTILEISLVTGILAYKFGAPFVLITSLSVAAYVTFTLTITQTVKYFNNEVYEADNYDKYLKRYEDAALKTQRSLALLNFGQNVIFSTALSSAMVLCSHGIMDGTMTVGDLVMVNGLLFQLSLPLNFLGSVYRETIQSLVDMKSMFQLLEERADIRDKENAKPLRFNGGRIQFENVHFSYLTERKILDKISFAVPAGKSVAIVGTSGSGKSTILRLLFRFFDPHSGSIKIDDQDIREVTLESLRKSIGVVPQDTVLFNDTIYHNIHYGRLSATEEEVYEAAQQAAIHNTIMSFPDKYSTVVGERGLKLSGGEKQRVALARAFLKAPAILLCDEATSALDSTTEAEILSALKSVANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGPHEVLLSKAGRYAQLWGQQNNTVDAIDTAIKLGA 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1967 650 ProSitePatterns ABC transporters family signature. 537 551 IPR017871 GO:0005524
Aed3g1967 650 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 97 366 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed3g1967 650 PANTHER ABC TRANSPORTER OF THE MITOCHONDRION 1-RELATED 272 641 - -
Aed3g1967 650 SUPERFAMILY ABC transporter transmembrane region 91 379 IPR036640 GO:0005524|GO:0016021
Aed3g1967 650 CDD ABCC_ATM1_transporter 400 635 - -
Aed3g1967 650 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 400 634 IPR003439 GO:0005524
Aed3g1967 650 MobiDBLite consensus disorder prediction 24 65 - -
Aed3g1967 650 Pfam ABC transporter 416 565 IPR003439 GO:0005524
Aed3g1967 650 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 62 271 IPR039421 -
Aed3g1967 650 MobiDBLite consensus disorder prediction 24 68 - -
Aed3g1967 650 Pfam ABC transporter transmembrane region 266 353 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed3g1967 650 PANTHER ABC TRANSPORTER OF THE MITOCHONDRION 1-RELATED 62 271 - -
Aed3g1967 650 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 272 641 IPR039421 -
Aed3g1967 650 SMART AAA_5 425 611 IPR003593 -
Aed3g1967 650 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 389 635 IPR027417 -
Aed3g1967 650 Gene3D - 392 646 IPR027417 -
Aed3g1967 650 CDD ABC_6TM_ATM1_ABCB7 99 374 - -
Aed3g1967 650 Gene3D ABC transporter type 1, transmembrane domain 83 390 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1967 Aed-Chr3 23841078 23856624 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1967 271 631 Calmodulin-binding Proteins AT2G36910 38.196 3.05e-65 231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g1967 3 23841078 23856624 Aed3g1967 3 23841078 23856624 ECH