Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1962 ATGGATGAGAATTGGGGTTCAAGGCCACTACTGGGGAACCAGAGCCATGATGGGAACTCTTTTAACTCTCTTAGAACAGCTTTCTTTTCCAAGCTTCCTGATAAGAAAGAATATTATGAAAGACAATTTGCTACTCTGAAATCATTTGAAGAAGTTGACTCCATAGTAACATTGGACTGCATCGATGAAGACGACATTGGTAAACAAGCTCAACATGAACGAGCAATGAAGATTTCTAATTATGCAAATGCAGTTTTATTGGCATTGAAGATTTATGTGACTATAAGGAGTGGATCAATAGCTGTTGCAGCATCAACATTGGATTCTCTGCTTGACTTCATGGCTGGTGGCATACTTTGGTTCACCCACGTTGCAATGAAGGATATAAATATGTACAAATACCCAATTGGAAAGCTGAGGGTGCAGCCAGTGGGTATAGTGTTAGTCACAGCTTTACAACAACTAATAGAAAACAATCCTCCTGAGAAGATGTCTTTTGATCAACTAGTATGGCTGTACTCCATTATGATATTTGCAACAGTGGTGAAGCTTGCACTCTGGCTTTACTGTAGAAGCTCAGGAAACAAAATTGTCCGCGCCTATGCAGATGATCACCACTTTGATGTTGTAACAAACGTGATAGGATTAGTTGCAGCTGTTCTTGGTGATAAATTTTACTGGTGGATCGACCCGTTTGGCGCTATTTTGCTTTCAATTTACACTATTACTAATTGGTCTGGCACTGTGATGGAAAATGCAGTAACACTAGTGGGACAATCTGCACCACCTGAAGTTCTGCAGAAGCTGACTTATCTTGTTGTAATGCACTCTCAAATTAAGCGCATTGACACTGTCCGTGCCTACACATTTGGTGTTCTATATTTTGTGGAGGTTGACATTGAACTACCGGAGGATTTACCCTTAAAAGAAGCACATGCCATTGGAGAGAGCCTACAGATAAAGCTGGAGAAGCTTCCAGAAGTTGAGAGGGCATTTGTTCATCTAGACTTCGAATGTGATCACAAACCAGAGCACTCAGTTCTTAGTAAATTGCCTGACATAAGCAACGGTAACACTAGATATTTGAAAATTATATTTCCGGTAGTTCCTACCGTGTCAGAAAGTAAGTTCAGTTCAATAAACTGCCCTTCATTTCCCCTCTTTTCCTCGACGCTCTGCACCTTCATTCTGTACATGATGGCGAAGGGTTGCATCAGTAACACTTACGAAGAGGCTAGAAAAAGAAGACTTGAAGAAAACAAAAAGAGGTTTGAGGATTTGGGAATTTCAAGGATTACAAAAAATTTGACTAAAATTGCAAATTCTGCAAAGAAGACGCTGCATCATCTTCCTAAACTGACACCAAAGAAGACAAATGTTGAAGTGGGACCTAGGCGATCTTCTCGTGTGCGAAATCCAGTTCCTTCATACCGTGAAGCTGTAAGTATTATTAGTCTTTCAAACTACCATAATGCAGGATCAGACAACAAGCATGTGAGGATGGACCTTCCACCTTTGCGGAAGAGGTCAAGGTCAAGTTCTTCATCATGGGGAAGTTACATTGCGAGGCCACTAGATGAAATCAAAGAAGCAACAGAAGAGGAAAGACTGTGTGCTCTGGAGGCTGCAGAGTCACTCCAAATCAATTTGAACTCATCAAATCCTTCATTTATCAAGTCAATGCTTCGGTCTCACGGTCTTCCTTCTAAATTTTGTGAGGAACATCTTCCCAAAACTGTATATGACATGGTTTTAGAAGATGAAAATGGCTCAGAATATGAAGCTGTTTACATTGGCAACAGAACTGGGCTTAGTGGTGGCTGGAGAGCATTTGCATTGGATCATAAACTGGATGATGGTGATGCCCTTGTTTTTGAATTGATTGAAACTTCAAGATTTAAGATTTATATTGTTAGAGCATTTCCAGATTCAGTTGAAGAAAAGGAAAAGGATATTTTAGAGGAAGAAGGAAATATGCGTGCAACCAAAGCACCAAAAGCGGCCTGTAATCTTGAATCAGAATGCAAGACCAAAAAGCTAAAACAGGCTGCAGTTTATGAAACTAAGGAATCGGAGAGTTCTCAGGAGCATCTGCCAGATAGCAGCATTGACAAAAAAGAAGTCAAACCATCGGGAGTAAATCCAACTAAGAAAACTAATTTTTCTCAGAAAAAAATGCAAAAGAAATCTAAATTTTCCGCTACTGCTGAGTCAAAAGGGAAGGCGCAAATTAAAACTGAGAAACCCAAGGCATCTGTAAAGCTGTCAAACAAGACAAGTAAGTCAAAAGAAGATATTATAAATGAAGTTGGTGACTCAGACAAGTTAGAGAAGGATGGGTTTGTTCAGGATGCTAATAGCAAGTTAGAGAAAGTTGAACTAGTTAAAGAAGCAAGCAAGTGTGTGTCACAAAAAGCTAGAAAAACACCAGCTCCAAAGTTTTTCAGAAAGAAAGCTTAA 2460 0.3972 MDENWGSRPLLGNQSHDGNSFNSLRTAFFSKLPDKKEYYERQFATLKSFEEVDSIVTLDCIDEDDIGKQAQHERAMKISNYANAVLLALKIYVTIRSGSIAVAASTLDSLLDFMAGGILWFTHVAMKDINMYKYPIGKLRVQPVGIVLVTALQQLIENNPPEKMSFDQLVWLYSIMIFATVVKLALWLYCRSSGNKIVRAYADDHHFDVVTNVIGLVAAVLGDKFYWWIDPFGAILLSIYTITNWSGTVMENAVTLVGQSAPPEVLQKLTYLVVMHSQIKRIDTVRAYTFGVLYFVEVDIELPEDLPLKEAHAIGESLQIKLEKLPEVERAFVHLDFECDHKPEHSVLSKLPDISNGNTRYLKIIFPVVPTVSESKFSSINCPSFPLFSSTLCTFILYMMAKGCISNTYEEARKRRLEENKKRFEDLGISRITKNLTKIANSAKKTLHHLPKLTPKKTNVEVGPRRSSRVRNPVPSYREAVSIISLSNYHNAGSDNKHVRMDLPPLRKRSRSSSSSWGSYIARPLDEIKEATEEERLCALEAAESLQINLNSSNPSFIKSMLRSHGLPSKFCEEHLPKTVYDMVLEDENGSEYEAVYIGNRTGLSGGWRAFALDHKLDDGDALVFELIETSRFKIYIVRAFPDSVEEKEKDILEEEGNMRATKAPKAACNLESECKTKKLKQAAVYETKESESSQEHLPDSSIDKKEVKPSGVNPTKKTNFSQKKMQKKSKFSATAESKGKAQIKTEKPKASVKLSNKTSKSKEDIINEVGDSDKLEKDGFVQDANSKLEKVELVKEASKCVSQKARKTPAPKFFRKKA 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1962 819 SUPERFAMILY DNA-binding pseudobarrel domain 550 639 IPR015300 -
Aed3g1962 819 CDD B3_DNA 555 639 IPR003340 GO:0003677
Aed3g1962 819 Gene3D - 531 641 IPR015300 -
Aed3g1962 819 ProSiteProfiles B3 DNA-binding domain profile. 567 641 IPR003340 GO:0003677
Aed3g1962 819 Pfam B3 DNA binding domain 564 638 IPR003340 GO:0003677
Aed3g1962 819 SUPERFAMILY Cation efflux protein transmembrane domain-like 71 258 IPR027469 -
Aed3g1962 819 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 260 338 IPR036837 -
Aed3g1962 819 Gene3D Cation efflux protein, cytoplasmic domain 259 337 IPR036837 -
Aed3g1962 819 MobiDBLite consensus disorder prediction 800 819 - -
Aed3g1962 819 MobiDBLite consensus disorder prediction 730 766 - -
Aed3g1962 819 MobiDBLite consensus disorder prediction 713 729 - -
Aed3g1962 819 Pfam Dimerisation domain of Zinc Transporter 262 336 IPR027470 -
Aed3g1962 819 Pfam Cation efflux family 78 256 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Aed3g1962 819 PANTHER MN-SPECIFIC CATION DIFFUSION FACILITATOR TRANSPORTER MTP8.1 35 354 - -
Aed3g1962 819 PANTHER MN-SPECIFIC CATION DIFFUSION FACILITATOR TRANSPORTER MTP8.1 3 36 - -
Aed3g1962 819 PANTHER MITOCHONDRIAL METAL TRANSPORTER 1-RELATED 35 354 - -
Aed3g1962 819 PANTHER MITOCHONDRIAL METAL TRANSPORTER 1-RELATED 3 36 - -
Aed3g1962 819 Gene3D Cation efflux protein transmembrane domain 72 256 IPR027469 -
Aed3g1962 819 MobiDBLite consensus disorder prediction 686 766 - -
Aed3g1962 819 SMART B3_2 557 641 IPR003340 GO:0003677
Aed3g1962 819 MobiDBLite consensus disorder prediction 686 712 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1962 Aed-Chr3 23799359 23807212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1962 405 640 B3 DNA Binding Superfamily AT5G58280 44.238 9.57e-54 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aed3g1962 Cation_efflux 1.6e-15 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g1962 3 23799359 23807212 Aed3g1962 3 23799359 23807212 ECH