Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1961 ACAAGAGCATGTCTGTTTCCCGTCCTAATTAAGAGAATTGAGGTTTTGGCTGTTGAGTTCAGTACTGCTGTTGGTGATCATCAGATCACTGACCCCACTGAAGTTGACGCATTACAAATCCTAAAGGGAAGTTTGATTGATGTCAATGGAAATTTGAGCAGCTGGAATCGTGGAGACCCATGTACATCTAACTGGGCTGGGGTTATGTGCTTCAATACAACATTAGTCGATGGCTATCTACATATTCAGCAATTGCATCTACTGAATATGAACTTGTCTGGAACTTTGGTACCGGAGATTAGCCGCTTATCTTATCTGGAAGTGTTGGACTTTATGTGGAATGACATAACTGGGAGTATACCAAAGGAAATTGGCTTTATCTATCCTTTGAAACTCTTACTCCTGAGTGGAAATCAATTAACAGGTGAGTTACCAGAAGAGCTTGGCTTGCTTTCATTCCTGAATAGATTGCAAATAGATCAGAACAATGTCACCGGACGTATACCTGTACAATTTGAAAAACTAAGTAGCCTTGTGCATATCAGTCACATGAACAACAATTCACTTAGTGGGCAAATCCCACCAGAGCTTTACAAATTAGGAAAACTTCGCCACTTTCTTCTTGACAACAACAACCTTACAGGATATCTCCCCTCTGAGTTCTCTGTGATGCCAAGCTTAAAGATCATTCAATTTGATAACAACAACTTTAGTGGAAATAGCATTCCAGATTCTTATGCCAGCATGTCTAAATTGACAAAATTGAGCCTTAGGAACTGCAAATTGCAAGGACCAATGCCTGATTTGAGCACGATGCCACAGCTTACTTATCTTGACCTCAGTTTCAATCAGTTTAATGAATCAATTCCTACTAATAAGCTTTCAGACAATATCACAACCATTGATTTATCAAACAATAAGCTTATTGGAACTATTCCATCCTATTTCTCTAGTCTTCCACGTCTTCAGAAGCTGTCAATTGCACACAATTCATTGAGTGGAAGTGTTCCTTCTACCATTTGGCAGGACAGGCTTGAAGGAAATCCTATGTGCTCAAATAACAATACACTAGTTCCATTCTGTGGACCTGAAACTGAAAGTGACAGTAACATCAATGGCAACTTCAGTGTTAGCTGTCTCAGTCAATCATGCGACCCTCCTTATGAATATGCCGTGGAATGTTTCTGTGCTGTCCCTTTGGTTGTTAAATATCGATTAAAAAGTCCAGCATTTACAGATTTCCCCAGATACAAGAATGCATTTCAGGGCTTGGTGTCAGACGGTCTTAAAATAAATTTTGATCAGCTCTACATTAACAGTTTTGCATGGGAAAAAGGCCCGCGGTTGGGAATGAACTTGAAGGTTTTTCCTATATATGTTGACAATAGAAGCTCTCATTCTTTCAATACAAGTGAGGTTCTTCGGATCAGAAACATGTTCTTAGACTTTGATGTTCCAAGCAATGACTTGTTTGGACCTTCGGAACTTCTAGACTTCATTCTCCTTGGTCCTTACAAAGGAACGGTTATTCCCCCTCCAAGTTCATCAGGGATAAGCAAAGGTGCACTGGCTGGAATAGTCTTAGGTGCAATTTCCCTTGCAGTTACATTATCTGCAATTGTTGCCATTTTTATATTGAGAATACGCTTGAGAGATAACAATACACCTTCCAAACGGCAAAAAGGTGAGTACCTTAAAGGGTCTAATTTGTTGATCTCAATAAAGATTGAAGATATAAGATCATTTGATTATGAAGAAATGGCTGCGGCTACAAACAATTTTAGTGACTCTGCACAAATTGGACAAGGAGGGTATGGGAGGGTTTACAAAGGTGTTCTTCCTGATGGCACTGTTGTTGCCATAAAACGTGCACAAGAGGGTTCACTGCAAGGTGAAAAGGAGTTCCTTACTGAAATACAGTTGCTATCAAGGTTACATCATCGCAATCTTGTGTCTCTTATTGGATATTGTGATGAAGAGGGAGAACAGATGTTGGTTTATGAATATATGCCAAATGGAACTCTAAGGGATCACCTTTCTGGTAAATCTTGTGCTCATATATCAAATTTGCTGTATTATAGTGTTAAGGAGGCATACCAATCTGGTGGAATATTTTCAGTTATAGATAAACGTATCGATTCTTATCCTTCTGAGTGTGTGGAGAAATTTTTGAGTTTATCCTTAAAGTGTTGCAAAGATGCACCAGAAGAGAGGCCTAAAATGATAAAAGTGGCCAGAGAGCTTGAAAACCTCTGCTCTATGTTACCTGAGACTGTTTCTATGGAAGCAGAATATGTGACAAGTGATTCTATTTCTGGAAGAGTATCCAGTTCACAACCTTCATCATCTGCTATCAGGACTCCTTTTGTTTCAGCAGATGTGTCAGGTAGTGACCTTGTCAGTGGGAAGATACCAACCATTAGGCCAAGATAG 2433 0.395 TRACLFPVLIKRIEVLAVEFSTAVGDHQITDPTEVDALQILKGSLIDVNGNLSSWNRGDPCTSNWAGVMCFNTTLVDGYLHIQQLHLLNMNLSGTLVPEISRLSYLEVLDFMWNDITGSIPKEIGFIYPLKLLLLSGNQLTGELPEELGLLSFLNRLQIDQNNVTGRIPVQFEKLSSLVHISHMNNNSLSGQIPPELYKLGKLRHFLLDNNNLTGYLPSEFSVMPSLKIIQFDNNNFSGNSIPDSYASMSKLTKLSLRNCKLQGPMPDLSTMPQLTYLDLSFNQFNESIPTNKLSDNITTIDLSNNKLIGTIPSYFSSLPRLQKLSIAHNSLSGSVPSTIWQDRLEGNPMCSNNNTLVPFCGPETESDSNINGNFSVSCLSQSCDPPYEYAVECFCAVPLVVKYRLKSPAFTDFPRYKNAFQGLVSDGLKINFDQLYINSFAWEKGPRLGMNLKVFPIYVDNRSSHSFNTSEVLRIRNMFLDFDVPSNDLFGPSELLDFILLGPYKGTVIPPPSSSGISKGALAGIVLGAISLAVTLSAIVAIFILRIRLRDNNTPSKRQKGEYLKGSNLLISIKIEDIRSFDYEEMAAATNNFSDSAQIGQGGYGRVYKGVLPDGTVVAIKRAQEGSLQGEKEFLTEIQLLSRLHHRNLVSLIGYCDEEGEQMLVYEYMPNGTLRDHLSGKSCAHISNLLYYSVKEAYQSGGIFSVIDKRIDSYPSECVEKFLSLSLKCCKDAPEERPKMIKVARELENLCSMLPETVSMEAEYVTSDSISGRVSSSQPSSSAIRTPFVSADVSGSDLVSGKIPTIRPR 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1961 810 SMART LRR_typ_2 200 223 IPR003591 -
Aed3g1961 810 SMART LRR_typ_2 272 296 IPR003591 -
Aed3g1961 810 SMART LRR_typ_2 319 343 IPR003591 -
Aed3g1961 810 Gene3D Ribonuclease Inhibitor 32 183 IPR032675 -
Aed3g1961 810 Gene3D Ribonuclease Inhibitor 296 355 IPR032675 -
Aed3g1961 810 Gene3D Ribonuclease Inhibitor 184 295 IPR032675 -
Aed3g1961 810 SUPERFAMILY Protein kinase-like (PK-like) 579 777 IPR011009 -
Aed3g1961 810 Pfam Leucine Rich Repeat 297 319 IPR001611 GO:0005515
Aed3g1961 810 SUPERFAMILY L domain-like 43 338 - -
Aed3g1961 810 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 344 686 - -
Aed3g1961 810 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 16 344 - -
Aed3g1961 810 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 691 786 - -
Aed3g1961 810 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 16 344 - -
Aed3g1961 810 Gene3D Phosphorylase Kinase; domain 1 568 669 - -
Aed3g1961 810 ProSiteProfiles Protein kinase domain profile. 594 810 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed3g1961 810 Pfam Protein tyrosine and serine/threonine kinase 598 695 IPR001245 GO:0004672|GO:0006468
Aed3g1961 810 Pfam Leucine rich repeat N-terminal domain 32 70 IPR013210 -
Aed3g1961 810 ProSitePatterns Protein kinases ATP-binding region signature. 600 622 IPR017441 GO:0005524
Aed3g1961 810 Gene3D Transferase(Phosphotransferase) domain 1 670 769 - -
Aed3g1961 810 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 344 686 - -
Aed3g1961 810 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 691 786 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1961 Aed-Chr3 23778159 23789347 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1961 683 757 Receptor kinase-like Gene Family AT5G01950 41.333 2.21e-10 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Aed3g1961 PK_Tyr_Ser-Thr 8.1e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1961 - - gmx:100785752 1085.09