Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1960 ATGCACAAGGAGGAAGCTACGGACTTCATGTGGAATAACATAACTGGGAGTATACCAAAGGAAATTGGCTTTATCAATCCTTTGAAACTCTTACTCCTAAATGGAAATCAATTAACCGGTGAGTTACCAGAAGAGCTTGGCTTTCTTCCATTCCTGATCAGAATGCAAATAGATCAGAACAATATCACAGGACCCATACCTTTATCATTTGCAAAACTGAACAGCACTGTACATTTTCACATGAACAACAATTCACTTAGTGGGCAAATCCCACCACAGCTTTCCAGCTTAGGAAGCCTTCTTCACCTTCAACTTGACAACAACAACTTTATTGGAAATAGCGTTCCAGATTCTTTTGGCAACATGTCAAAATTGATAAAATTGAGCCTTAGGAACTGCAACTTGGAAGGACCAATTCCCGATTTGAGTACGATACCACACCTTTCTTATCTTGACCTCAGTTTCAATCAGTTGAACGAATCAATTCCTACTAATAAGCTTTCAGACAATATCACAACCATTGATTTATCAAACAATAGGCTTATTGGAACTATTCCATCCTACTTTTCTGGTCTTCCACGTCTTCAGAAACTGTCAATTGCAAATAATTCATTGAGTGGAAGTGTTCCTTCTACCATTTGGCAGGACAGGATTTTAAATGGATCAGAAATACTTCACTTGCAGCACAAATCTTCCTCCAAATGTCACACTCTGTTCTGTGGACCTGAAACTGAAAGTGACAGTAGTTTCAATGATAACTTCAGTGTTAGCTGTCTCAGTCAAGCATGCCCCCCTCCTTATGAATACACTGTGGAATGTTTCTGTGCTGCCCCGTTGGTTGTTAATTATCGACTAAAAAGTCCAGCATTTTCAGATTTCCGCAGATACATGAATGCATTTCAGAGCATGCTGTCAAGGGGACTTAAAATACAAATTAACCAGCTCTATATTAACAGTTTTGCATGGGAAGAAGGTCCACGGTTGGGAATGAACTTGAAGTTTTTTCCTATATATGTTGATAATAGAAGCTCTCATGTTTTCAATACAAGTGAGGTTCTCCGGATCAGAAACTTGTTCATAGACTTTGATCTTCCAACCAATGATTTGTTTGGACCTTTTGAACTTCTAGACTTCATTCTCCTTGGACCATATAGAGATGTGATTATTACCACTCCAACAGGGATAAGCAAAGGTGCACTGGCTGGAATAGTCTTAGGTGCAATTGCCCTTGCAGTTACATTATCTGCAATTGTTACCATTCTTATACTGAGAATACGTTTGAGAGATAACAACACACCTTCCAAACGGCAAAAAGCATCAAGGATCTCAATAAATATTGAAGATATAAGATCATTTGATTATGATGAAATGGCTGCGGCTACAAACAATTTCAGAGACTCTGCTCAAATTGGACAAGGGGGGTATGGGAGGGTTTATAAAGGTGTACTTCCTGATGGCACTGTTGTTGCCATAAAACGTGCACAAGAGGGTTCAATGCAAGGTGAAAAGGAGTTCCTTACGGAAATACAGTTGCTATCAAAGTTACATCATCGCAATCTTGTGTCTCTTGTTGGATATTGTAATGAAGAGGGTGAACAGGTTAACATAGCATACGAATCTGGTGGATTGTTTTCAGTTATTGATAAACGTATTGGTTCTTATCCTTCAGAATGTGTGGAGAAATTTTTGACTTTGGCCTTAAAGTGTTGCAAAGATGAACCAGATGCCAGGCCTAAAATGGCAGAAGTGGCTAGAGAGCTTGAAAACATCTGTTCTATGTTACCTGAGACCATCGACGCGGTCGCTGTGGAAGCAGAATATGTGGTAAATGATTCTGGAAGAGTATTCAGTTCACAACCTTCATCATCTGCTGCCAGGACTGATCCTTTTGCTTCAGCAGATGTTTCAGGCAGTGATCTTGTCAGTGGAAAGATACCAACCATTAGGCCAAGATAG 1956 0.3962 MHKEEATDFMWNNITGSIPKEIGFINPLKLLLLNGNQLTGELPEELGFLPFLIRMQIDQNNITGPIPLSFAKLNSTVHFHMNNNSLSGQIPPQLSSLGSLLHLQLDNNNFIGNSVPDSFGNMSKLIKLSLRNCNLEGPIPDLSTIPHLSYLDLSFNQLNESIPTNKLSDNITTIDLSNNRLIGTIPSYFSGLPRLQKLSIANNSLSGSVPSTIWQDRILNGSEILHLQHKSSSKCHTLFCGPETESDSSFNDNFSVSCLSQACPPPYEYTVECFCAAPLVVNYRLKSPAFSDFRRYMNAFQSMLSRGLKIQINQLYINSFAWEEGPRLGMNLKFFPIYVDNRSSHVFNTSEVLRIRNLFIDFDLPTNDLFGPFELLDFILLGPYRDVIITTPTGISKGALAGIVLGAIALAVTLSAIVTILILRIRLRDNNTPSKRQKASRISINIEDIRSFDYDEMAAATNNFRDSAQIGQGGYGRVYKGVLPDGTVVAIKRAQEGSMQGEKEFLTEIQLLSKLHHRNLVSLVGYCNEEGEQVNIAYESGGLFSVIDKRIGSYPSECVEKFLTLALKCCKDEPDARPKMAEVARELENICSMLPETIDAVAVEAEYVVNDSGRVFSSQPSSSAARTDPFASADVSGSDLVSGKIPTIRPR 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1960 651 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 5 534 - -
Aed3g1960 651 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 533 614 - -
Aed3g1960 651 SUPERFAMILY L domain-like 11 213 - -
Aed3g1960 651 ProSiteProfiles Protein kinase domain profile. 464 651 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed3g1960 651 Pfam Leucine rich repeat 170 214 IPR001611 GO:0005515
Aed3g1960 651 SUPERFAMILY Protein kinase-like (PK-like) 440 540 IPR011009 -
Aed3g1960 651 Pfam Protein kinase domain 465 548 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed3g1960 651 Gene3D Ribonuclease Inhibitor 5 244 IPR032675 -
Aed3g1960 651 Gene3D Phosphorylase Kinase; domain 1 427 539 - -
Aed3g1960 651 ProSitePatterns Protein kinases ATP-binding region signature. 470 492 IPR017441 GO:0005524
Aed3g1960 651 MobiDBLite consensus disorder prediction 616 651 - -
Aed3g1960 651 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 5 534 - -
Aed3g1960 651 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 533 614 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1960 Aed-Chr3 23766640 23776038 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1960 504 596 Receptor kinase-like Gene Family AT5G01950 37.634 1.24e-10 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Aed3g1960 Pkinase 5.4e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1960 - - gmx:100785752 813.913
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g1960 3 23766640 23776038 Aed3g1960 3 23766640 23776038 ECH
Aed3g1960 3 23766640 23776038 Aed4g2142 4 24261650 24270042 PCT