Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1959 ATGAATATTGATTCTAACTGGTTAAGTTCAGGAGAGACAATCAAGAAGAGGCTTGGTGATCAGTTCTTCTGGGTTCCAGCTGGGATGTATCTTTCAAAGTGTTGTAGGTGTGAAGTTGTTTTCTGCTTCTGGTTTTGTTGCTATTTCCTATTGGCTGCTGCTCAAGTCACTGACCCCACAGAAGTTGAAGCATTGAGAGCCATAAAGAGAAGTTTGTTTGATATCAATGGAAATTTGAGCAGCTGGGATCATGGAGACCCATGTACATCTAACTGGACTGGGGTGTTGTGCTCCAATACAACAGTGGACAATGGCATTCTACATGTTCTACGATTGCAACTACTGAATTTGAACTTGTCTGGGACTTTGGCACCAGAGATTGGCAACTTATCTCATCTGGAAACATTGGACTTTATGTGGAACGACATAGGTGGGAGCATACCGAAGGAGATTGGAAATATCAAAACTTTGAGACTCTTACTCCTGAATGGAAATAAACTAGTAGGTGATCTGCCGGAAGAGCTTGGCCATCTTCCAGTCTTGGACAGAATACAAATTGATGAGAACCAAATTACAGGATCCATACCATTATCATTTGCAAAGCTGAACAACACGAGACACTTTCACATGAACAACAATTCACTCAGTGGACAAATCCCATCAGAGCTTTCCCAATTAGGAAGCCTCGTGCATCTTCTTCTCGACAACAATAACTTTACAGGAAATCTCCCATCCGAGTTCTCTGACATGCCAAGCTTAAAGATACTTCAACTTGATAACAACAACTTCAGTGGAAATAGCATTCCAGGATCTTATGGCAACATGCCAAAATTAATAAAACTGAGCCTTAGGAACTGCAACTTGCAAGGACCAATTCCCGATTTCAGCAGGATAGTACACCTTACTTATCTTGACCTCAGTTTCAATCGGTTGAATGAATCAATTCCTACCAATACTTTGTCAGACAATATCACAACCATTGACTTATCAAACAACAATCTCAATGGAACAATTCCATCCTACTTTTCTGGTCTTCCTCATCTTCAGAAATTGTCAATTGCACACAATTCATTGAGCGGCAATGTTCCTTCTACAATTTGGCAGGACAGGACTTCAAATGGATCAGAACTTATCTTGCTTGAGGGAAATCCTGTATGCTCAAATAATAACTCCTTAGCTCATTTATGTGGACCTGAAAGTGACATTGACAAGAATGGAGTCTCCAGTGTTGTGTGTCCCAATCAAGGAGGATGCCCCCCTCCTTATGAATACAGTGTGGATTGTTTCTGTGCTGCTCCATTGATTGTTCATTATCGGTTGAAAAGTCCAGGATTTTCTGATTTTCGTACTTACACTAGAGACTTTAAGAGCTTCCTGGCAAATGGTCTTACTCTAAATGTTAGTCAGCTGTTAATTGAGCATTTTACATGGGAAGAAGAGCGGTTGAGAATGAACTTGAAGATTTTTCCTGAATATATTGACAATGGAAGTTCTCATAAGTTCACCACAAGTGAGGTTAATAGGATCAGAGACTTGTTCAGTGAATGGCACATTCCTGACAATGAGTTGTTCGGGCCTTATGAACTTCTGGACTTCATTCTACTGGATCTTTATAGGGATGCGATTACGCCCTCTTCAAATTCAGGGATAAGCAAAGGTGCACTGGCTGGAATAATCATAGGTGCAATTGCCTGTGCAGTTACATTATCTGCAATTGTTTCCATTCTTATTTTGAGAATACGCTTGAGAGATTATCGTGCACTTTCCAGACGGCGTAATGTGTCTAGGATCTCCATAAAAGTTGATGGTGTAAGATCATTTTATTACAAAGAAATGGCTTTGGCTACAAACAATTTCAGCCAGTCTGCTCAAATTGGAGAAGGGGGCTATGGGAAGGTTTATAAAGGTGTTCTTCCTGATGGCATTGTTGTGGCCATAAAACGTGCACAGGAGGGTTCTCTGCAAGGTGAGAGGGAGTTCCTTACAGAAATAGAATTGCTATCAAGGGTACATCATCGCAACCTCGTGTCTCTGATTGGATACTGTGATGAAGAGGGTGAACAGATGTTGGTCTATGAATATATGTCAAAGGGAACACTAAGGGATCACCTTTCTGGGGACCCCGGTATGGTTAATATGTCGTACAGTTCTGGTGGAATATCTTTGGTTGTTGATAAACGTATCGAGTCTTATCCTCCTGAGTATGCTGAGAAATTTCTGACTTTAGCCTTAAAGTGTTGCAAAGACACCCCAGATGAGAGGCCTAAAATGTCAGAAGTGGCTAGAGAGCTTGAACTCATTTGTTCTATGTTACCTGAGTCAGATACCAAGGGACATGAATATGTTATTACAAGTGATTCTTCTGGTACAATATTCAGTTCACAACCTTCATCATCATCTACTATGATGACTCCTTTTATTTCAGGAGATGTTTCAGGTAGTGACCTTGTTAGTGGAAGCATACCAACCATCAACCCGAGATAG 2484 0.4082 MNIDSNWLSSGETIKKRLGDQFFWVPAGMYLSKCCRCEVVFCFWFCCYFLLAAAQVTDPTEVEALRAIKRSLFDINGNLSSWDHGDPCTSNWTGVLCSNTTVDNGILHVLRLQLLNLNLSGTLAPEIGNLSHLETLDFMWNDIGGSIPKEIGNIKTLRLLLLNGNKLVGDLPEELGHLPVLDRIQIDENQITGSIPLSFAKLNNTRHFHMNNNSLSGQIPSELSQLGSLVHLLLDNNNFTGNLPSEFSDMPSLKILQLDNNNFSGNSIPGSYGNMPKLIKLSLRNCNLQGPIPDFSRIVHLTYLDLSFNRLNESIPTNTLSDNITTIDLSNNNLNGTIPSYFSGLPHLQKLSIAHNSLSGNVPSTIWQDRTSNGSELILLEGNPVCSNNNSLAHLCGPESDIDKNGVSSVVCPNQGGCPPPYEYSVDCFCAAPLIVHYRLKSPGFSDFRTYTRDFKSFLANGLTLNVSQLLIEHFTWEEERLRMNLKIFPEYIDNGSSHKFTTSEVNRIRDLFSEWHIPDNELFGPYELLDFILLDLYRDAITPSSNSGISKGALAGIIIGAIACAVTLSAIVSILILRIRLRDYRALSRRRNVSRISIKVDGVRSFYYKEMALATNNFSQSAQIGEGGYGKVYKGVLPDGIVVAIKRAQEGSLQGEREFLTEIELLSRVHHRNLVSLIGYCDEEGEQMLVYEYMSKGTLRDHLSGDPGMVNMSYSSGGISLVVDKRIESYPPEYAEKFLTLALKCCKDTPDERPKMSEVARELELICSMLPESDTKGHEYVITSDSSGTIFSSQPSSSSTMMTPFISGDVSGSDLVSGSIPTINPR 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1959 827 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 711 798 - -
Aed3g1959 827 Pfam Protein tyrosine and serine/threonine kinase 622 706 IPR001245 GO:0004672|GO:0006468
Aed3g1959 827 Gene3D Ribonuclease Inhibitor 214 267 IPR032675 -
Aed3g1959 827 Pfam Leucine rich repeat N-terminal domain 59 98 IPR013210 -
Aed3g1959 827 Gene3D Ribonuclease Inhibitor 268 395 IPR032675 -
Aed3g1959 827 SUPERFAMILY Protein kinase-like (PK-like) 592 763 IPR011009 -
Aed3g1959 827 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 39 707 - -
Aed3g1959 827 Gene3D Ribonuclease Inhibitor 59 213 IPR032675 -
Aed3g1959 827 ProSitePatterns Protein kinases ATP-binding region signature. 625 647 IPR017441 GO:0005524
Aed3g1959 827 Gene3D Transferase(Phosphotransferase) domain 1 692 785 - -
Aed3g1959 827 ProSiteProfiles Protein kinase domain profile. 619 827 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed3g1959 827 SUPERFAMILY L domain-like 73 366 - -
Aed3g1959 827 SMART LRR_typ_2 298 322 IPR003591 -
Aed3g1959 827 SMART LRR_typ_2 250 274 IPR003591 -
Aed3g1959 827 SMART LRR_typ_2 226 249 IPR003591 -
Aed3g1959 827 SMART LRR_typ_2 345 369 IPR003591 -
Aed3g1959 827 Gene3D Phosphorylase Kinase; domain 1 590 691 - -
Aed3g1959 827 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 39 707 - -
Aed3g1959 827 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 711 798 - -
Aed3g1959 827 Pfam Leucine rich repeat 300 358 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1959 Aed-Chr3 23756547 23766053 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1959 723 777 Receptor kinase-like Gene Family AT5G01950 43.636 8.98e-09 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Aed3g1959 PK_Tyr_Ser-Thr 5.3e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1959 - - gmx:100801035 956.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g2142 4 24261650 24270042 Aed3g1959 3 23756547 23766053 PCT