Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1957 ATGGCAGAGGTTACTTTGAATTCAAGTGTCAATATCTTATACCATACAACCAAAAATATCACCATGAAGTTCTACACCTCGCAAGTGCATCTTTTGCTTTTCATCATTGTTATTCTTTGCCCCGTGGTTATTGGAGACTTAAGATCTGATAAGCAAGCCCTTCTTGATTTTTCTGCTGCTGTCCCACATCGCCGTAACCTTAAGTGGAATCCAGCTACCCCAGTCTGTTTATCTTGGGTAGGCATCACTTGCAATCCAAATGGCACTCGTGTTGTTTCCATCCGGCTCCCTGGAATTGGACTAGTCGGCACCATCCCTGCCAATACACTTGGCAAGATTGACTCACTCAGAAATATCAGCCTCCGCACCAACCTACTAAGTGGAAGTGTTCCTCCCGATATCACTTCTCTTCCTTCTCTACAATATCTCTATCTTCAGCATAATAACCTTTCTGGTAACATACCCACCTCATTGTCCACCTGCCTCAATGTGCTTGAGTTGTCATACAATTCCTTCACTGGTGCTATTCCAAAGACATTACAAAACTTAACACAACTAACTAAGTTGAACCTCCAAAACAACTCACTATCTGGATACATACCAAATCTCAATGTCACTAAGCTCAGGCACTTGAATTTAAGCTACAACCATTTGAATGGCTCTATCCCTGCCGCTCTTCAGATTTTCCCGACTTCTTCCTTTGAGGGTAACTCTCTATGTGGATTACCTCTAAAGTCGTGCTCCGTAGTCCCTACACCTCCATCATTGCCTCCTTCCCCAGCATCTGCAAGACATGGCTCCAAAAGTAAACTGAGCAAGGCAGCTATCATTGCAATTGCAGTTGGAGGGGGCGTGCTATTGCTTTTAGTAGCACTCATTGTTGTTCTTTGCTGTTTAAAGAAGAAAGATGATGGAAGAAGCCCCAGAGCAGCTAAAGGCAAGGGTCCTAGTGGCGGGAGGAGTGAGAAGCCGAAAGAAGAGTTTGGAAGCGGGGTGCAAGAACCTGAGAAAAACAAGCTGGTTTTCTTCGAGGGAAGTTCTTATAATTTTGATCTTGAGGATTTGCTGAGAGCCTCTGCTGAAGTTCTTGGAAAGGGCAGTTATGGTACCGCGTATAAGGCTATATTGGAGGAGTCGACAACAGTTGTGGTGAAAAGGTTGAAGGAAGTCGTGGTAGGGAAAAGGGAATTTGAGCAGCAGATGGAGATTGTGGGAAGGGTTGGGCATCACCCAAATGTTGTGCCACTTCGCGCTTATTATTATTCCAAGGATGAGAAGCTCTTGGTTTCCGACTACATCCCAAGTGGCAATCTATCTACCCTCTTGCATGGTAACAGGGCAAGTGGAAGAACTCCATTAGATTGGAACTCGCGAATAAAAATCTCTGTTGGAATTGCCAGAGGAATTGCTCACATACATTCTGCCGGCGGTCCAAAATTCATGCACGGAAATGTAAAATCCTCGAATGTCCTTCTCAACCAAGATAATGATGGCTGCATTTCTGACTTTGGCCTGACCCCGCTTATGAATGTTCCTGCAACACCTTCTAGAGCCGCGGGTTACCGTGCTCCCGAGGTGATTGAAACCCGAAAGCACACTCACAAGTCAGATGTGTACAGCTTTGGCGTCCTCCTTCTAGAAATGCTTACTGGGAAAGCACCGCAACAGTCTCCGGGACGCGATGACATGGTTGATCTCCCTAGGTGGGTCCAGTCTGTTGTTAGAGAGGAGTGGACGGCTGAGGTTTTTGATGTGGAGCTAATGAGGTACCAAAACATTGAAGAAGAAATGGTGCAAATGTTGCAAATTGCCATGGCCTGCGTGGCAAAGGTTCCAGATATGAGACCTAGCATGGAGGAAGTAGTGAGAATGATTGAAGAGATCCGGCTATCCGACTCGGAAAACCGGCCGTCTTCAGAAGAGAATAGATCCAAGGAGGAATCTACTGCTCAAACTCCATAA 1962 0.4572 MAEVTLNSSVNILYHTTKNITMKFYTSQVHLLLFIIVILCPVVIGDLRSDKQALLDFSAAVPHRRNLKWNPATPVCLSWVGITCNPNGTRVVSIRLPGIGLVGTIPANTLGKIDSLRNISLRTNLLSGSVPPDITSLPSLQYLYLQHNNLSGNIPTSLSTCLNVLELSYNSFTGAIPKTLQNLTQLTKLNLQNNSLSGYIPNLNVTKLRHLNLSYNHLNGSIPAALQIFPTSSFEGNSLCGLPLKSCSVVPTPPSLPPSPASARHGSKSKLSKAAIIAIAVGGGVLLLLVALIVVLCCLKKKDDGRSPRAAKGKGPSGGRSEKPKEEFGSGVQEPEKNKLVFFEGSSYNFDLEDLLRASAEVLGKGSYGTAYKAILEESTTVVVKRLKEVVVGKREFEQQMEIVGRVGHHPNVVPLRAYYYSKDEKLLVSDYIPSGNLSTLLHGNRASGRTPLDWNSRIKISVGIARGIAHIHSAGGPKFMHGNVKSSNVLLNQDNDGCISDFGLTPLMNVPATPSRAAGYRAPEVIETRKHTHKSDVYSFGVLLLEMLTGKAPQQSPGRDDMVDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMVQMLQIAMACVAKVPDMRPSMEEVVRMIEEIRLSDSENRPSSEENRSKEESTAQTP 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1957 653 Gene3D Ribonuclease Inhibitor 49 162 IPR032675 -
Aed3g1957 653 MobiDBLite consensus disorder prediction 628 647 - -
Aed3g1957 653 CDD STKc_IRAK 363 628 - -
Aed3g1957 653 Pfam Leucine Rich Repeat 207 227 IPR001611 GO:0005515
Aed3g1957 653 Gene3D Phosphorylase Kinase; domain 1 325 432 - -
Aed3g1957 653 Gene3D Ribonuclease Inhibitor 163 250 IPR032675 -
Aed3g1957 653 ProSiteProfiles Protein kinase domain profile. 357 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed3g1957 653 MobiDBLite consensus disorder prediction 304 333 - -
Aed3g1957 653 SUPERFAMILY Protein kinase-like (PK-like) 361 635 IPR011009 -
Aed3g1957 653 Pfam Leucine rich repeat N-terminal domain 49 85 IPR013210 -
Aed3g1957 653 MobiDBLite consensus disorder prediction 628 653 - -
Aed3g1957 653 ProSitePatterns Protein kinases ATP-binding region signature. 363 394 IPR017441 GO:0005524
Aed3g1957 653 SUPERFAMILY L domain-like 60 229 - -
Aed3g1957 653 PANTHER OS05G0588300 PROTEIN 15 653 - -
Aed3g1957 653 PANTHER LRR RECEPTOR-LIKE KINASE 15 653 - -
Aed3g1957 653 Pfam Protein kinase domain 360 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed3g1957 653 Gene3D Transferase(Phosphotransferase) domain 1 433 651 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1957 Aed-Chr3 23730669 23735520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1957 24 651 Receptor kinase-like Gene Family AT5G58300 67.975 0.0 870
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Aed3g1957 Pkinase 4.7e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1957 - - gmx:100818344 1100.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g1957 3 23730669 23735520 Aed3g1957 3 23730669 23735520 ECH
Aed4g2145 4 24311791 24316611 Aed3g1957 3 23730669 23735520 PCT