Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1953 ATGTCCGTACACTCAACAACACTGAAGCTCCACCCCATGAACCCAGCAACCCCAAGTTCCCATTTTGACGACGACCCACCATGCAGAACCAAGACCAGAACCCAAAGGAGGCTCCTTCGGATCATAGTCACCGACCACGACGCCACCGATTCTGATTCCGACCACGAACAACAACAAACGAAAACCACAAGAGTCAAGAAAGAAATCACCCAAATCAACATGCAACTTCCTCTCTCATATAATCATTCTTTTAACTCTTCATCTTCTTATTACTCTTCAGCTTCTGCTTCCACTACTACTACTACTCCTTGTTCCTCGGAACAGAGCTTAAACTGCAAGAGACCCACCAAAAAACCTTCACCGTCGTCCTCCGCCACGGCCCGCCGCCGGAACAAGTTCCGCGGCGTCCGGCAGCGACCGTGGGGGCGGTGGGCCGCCGAGATCCGCGACCCCACCCGCCGGAAACGCCTCTGGCTCGGAACCTTCGACACGGCGGAGGAAGCCGCCACGGAGTACGACAGAGCCGCCGTGAAAATCAAGGGCCCCAACGCCGTCACCAACTTCCCCCTCACTCCGGAGGCTCCGGTGATCGCCGTCGACAACCTCAGCTACGACGGCGGCGCGTCGTACTCCGACTTAGTCGCCTCTCCGACTTCCGTTCTCGCCTACGAGTGCGACTCGACGCCGTTCGACGGGTTCCGTTACCTCGACGTGGACGCGTTTGGGTTCCACATCGATGCGCCGTTAAGTTTGCCGGATGTTAACGTTGCGCTGACGTGTCGTCATGGGAAGAAGGAGGAGGCGTTCGATGAATTCGATCTCGACGAGTTCATGACGTGGCCCTACTAA 849 0.5665 MSVHSTTLKLHPMNPATPSSHFDDDPPCRTKTRTQRRLLRIIVTDHDATDSDSDHEQQQTKTTRVKKEITQINMQLPLSYNHSFNSSSSYYSSASASTTTTTPCSSEQSLNCKRPTKKPSPSSSATARRRNKFRGVRQRPWGRWAAEIRDPTRRKRLWLGTFDTAEEAATEYDRAAVKIKGPNAVTNFPLTPEAPVIAVDNLSYDGGASYSDLVASPTSVLAYECDSTPFDGFRYLDVDAFGFHIDAPLSLPDVNVALTCRHGKKEEAFDEFDLDEFMTWPY 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1953 282 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF5-RELATED 33 227 - -
Aed3g1953 282 CDD AP2 132 189 IPR001471 GO:0003700|GO:0006355
Aed3g1953 282 PRINTS Ethylene responsive element binding protein signature 133 144 IPR001471 GO:0003700|GO:0006355
Aed3g1953 282 PRINTS Ethylene responsive element binding protein signature 155 171 IPR001471 GO:0003700|GO:0006355
Aed3g1953 282 MobiDBLite consensus disorder prediction 24 63 - -
Aed3g1953 282 MobiDBLite consensus disorder prediction 89 138 - -
Aed3g1953 282 Gene3D AP2/ERF domain 131 191 IPR036955 GO:0003700|GO:0006355
Aed3g1953 282 SMART rav1_2 132 195 IPR001471 GO:0003700|GO:0006355
Aed3g1953 282 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 33 227 - -
Aed3g1953 282 PIRSF PTI6 8 282 IPR017392 GO:0003700
Aed3g1953 282 Pfam AP2 domain 132 181 IPR001471 GO:0003700|GO:0006355
Aed3g1953 282 SUPERFAMILY DNA-binding domain 132 190 IPR016177 GO:0003677
Aed3g1953 282 MobiDBLite consensus disorder prediction 89 129 - -
Aed3g1953 282 MobiDBLite consensus disorder prediction 1 66 - -
Aed3g1953 282 ProSiteProfiles AP2/ERF domain profile. 132 189 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1953 Aed-Chr3 23718577 23719425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1953 29 225 AP2-EREBP Transcription Factor Family AT4G27950 41.463 1.14e-42 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aed3g1953 AP2 2e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g2148 4 24325044 24325841 Aed3g1953 3 23718577 23719425 PCT