Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1945 ATGGGAATTGAAGTTTGCATGAACGGTTCATGCAAGGGTGGCTTTGTGAGAGAATGGAAGAAAGGATGGCCTCTTCGATCGGGTGGATTCGCTAGACTCTGTGACAAGTGCGGATCTGCCTATGAGAGTTTGATTTTTTGTGAGAAATTTCACCTACATCAAACAGGATGGAGAGAGTGTTTCTTCTGCAACAAGACTATCCATTGCGGTTGCATTGTGTCAAGTTTTATGTTTAAGTGCCTTGACTTTGGAGGCATAGGTTGTACTACTTGCCTAAGGACTTCCCAACTCCTTTTAATGCGGGATACTGGAAACACTAATGAGAGTGTCAAATCAATAGAAAACAATGTAAGTGATCATTGTATGGAACATATTGATAATAGATTATTGGTGGATGGTGTTGGCAAAAGAAGCCATATGCAGTTGAGTAGAATTAATGTTGAAGCTGGTGAACCAAGTCGTTGGCCTCAAGATAAGAGAGATTCATGTATTGGTCCAAACATGCACCAAGAGGATAGAAGATTTTCAAGTGTGATGAAACAATCGTGTAGTCATTCATTAGCATTTACAATATTAGACAACAATAAACCAACGTTGAAAACACAAACAACCATGCACAAATCAAGTTCACTTAATATGTATTCTTCTGCTTTAGACACTATGGAAGGGAGACTTGAGGGTAAAACATCGTTTTGTACCTTAAATCAAGGGCAAAGACCTCTGTCTATATCTAAGCCATTGATGAATGAGATAGCTATGAATATAGAAGCTAGTAAAGGTAAGATTTCTCAGGAGCGCATTGCGCGACCACCTGTTGATGGGAAAGCCAAGAATGTGCTGCTTTCGCGATACTGGCCTAGGATTACCGATCAAGAGCTGGAGAAGTTGTCCGGAGATTTGAAGTCTATTATAATGCCATTGTTTGAGAAGATATTGAGTGCTAGTGATGTAGGTCGAATTGGTCGACTTGTCCTTCCAAAATCTTGTGCTGAAGCATACTTTCCTCCTATTTCACTATCGGATGGTATTCCTTTGCAATTCAAAGATGTTAAGGGAAATGATTGGACATTTCAATTCAGATTTTGGCCAAATAATAATAGTAGAATGTATGTATTGGAAGGAGTAACTCCTTGCATGCAGGCATTACATTTAAATGCTGGCGATATTGTAACGTTTAGTCGAATAGATCCTAGAGGCAAATTTGTTATGGGTTTCAGAAGGGCATTAGATTCTCTAGATACACAGGACGCCTCTACTTGTGCTCATTCCAATGATTTTTCAATAAGAGAAATAAATTATTATGAGGCAAATGTAAATCTACACTCAGGAAACAATTATCCTGATCTTCTCCAAACATGGAGAGGGAATAGCTTACCGTTCTTAAATGGATGTTCAGAACATTCGCGATTTGGTACTAGAACTTGTTAA 1428 0.388 MGIEVCMNGSCKGGFVREWKKGWPLRSGGFARLCDKCGSAYESLIFCEKFHLHQTGWRECFFCNKTIHCGCIVSSFMFKCLDFGGIGCTTCLRTSQLLLMRDTGNTNESVKSIENNVSDHCMEHIDNRLLVDGVGKRSHMQLSRINVEAGEPSRWPQDKRDSCIGPNMHQEDRRFSSVMKQSCSHSLAFTILDNNKPTLKTQTTMHKSSSLNMYSSALDTMEGRLEGKTSFCTLNQGQRPLSISKPLMNEIAMNIEASKGKISQERIARPPVDGKAKNVLLSRYWPRITDQELEKLSGDLKSIIMPLFEKILSASDVGRIGRLVLPKSCAEAYFPPISLSDGIPLQFKDVKGNDWTFQFRFWPNNNSRMYVLEGVTPCMQALHLNAGDIVTFSRIDPRGKFVMGFRRALDSLDTQDASTCAHSNDFSIREINYYEANVNLHSGNNYPDLLQTWRGNSLPFLNGCSEHSRFGTRTC 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1945 475 Gene3D - 286 412 IPR015300 -
Aed3g1945 475 CDD B3_DNA 306 407 IPR003340 GO:0003677
Aed3g1945 475 ProSiteProfiles B3 DNA-binding domain profile. 308 409 IPR003340 GO:0003677
Aed3g1945 475 SUPERFAMILY DNA-binding pseudobarrel domain 305 407 IPR015300 -
Aed3g1945 475 SMART B3_2 308 408 IPR003340 GO:0003677
Aed3g1945 475 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 4 426 - -
Aed3g1945 475 Pfam B3 DNA binding domain 308 407 IPR003340 GO:0003677
Aed3g1945 475 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 4 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1945 Aed-Chr3 23644554 23648771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1945 3 415 B3 DNA Binding Superfamily AT4G32010 46.875 4.07e-114 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aed3g1945 B3 2.3e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1945 - - gmx:100782543 709.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g2155 4 24372664 24380183 Aed3g1945 3 23644554 23648771 PCT