Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1942 ATGCAAGATCCATCCTCAAACTCTATCTCCAATCCAAATCCAAATCCCAATCCCCACAATGCAAATGCCGCACCCCAATTACCCCGTCCTCCGCCGTCCACGGCGGCCACAACCGCCGGCGCCGGCGCATCCTCGTCCTCTCTGTTTGCGCGCTCCGGCGGGTCTCACCACCGGCGAGCTCACTCGGAGGTGAGTTTCCGGCTTCCGGAAGACATGATGGACCTCTCCCCGTCGGATCCGTTCGCCGGCGGGTCGTCGACGGCGAGCATGGAGGAGATCGGATCGGAGGACGACCTGTTCTCGACGTACATTGACGTGGACAAGTTCGGCGGCGGGAACGGGGCGGATCCGAACGGCGAACGGGAGAGGAGTCCGGCGAGGCCACGCCACCGGCAGAGTAGTTCCGTCGATTTCGGAGAAATCATGGACGCGAAGAAGGCTATGCCTCCTGATAAGTTAGCTGAGCTATGGACACTTGATCCCAAGCGTGCCAAAAGAATACTTGCAAATCGGCAATCAGCTGCTAGATCGAAAGAGAGGAAAGCGCGGTATATACAAGAACTTGAGCGCAAGGTTCAGACTCTTCAGACGGAAGCCACAACTCTTTCTGCCCAATTGACCTTATACCAGAGGGACACAACGGGCCTGAGTTCTGAAAATACAGAGCTTAAGCTCCGTCTGCAAGCCATGGAGCAACAAGCACAGCTTCGCGATGCTCTTAATGACGCATTGAAGAAGGAAGTTGAGAGACTCAAGGTTGCTACCGGTGAGATGATGAGCCACACTGAATCCTTTAATCTGGGAATGCACCAGATGCCGTTTACAGGATCAAGTTTCATTCCAATCTCGCCACAATCAGGTCCTTCCAGTCACCAGAACATGCAGATGCCGCCACCGTTCAGTCACTCCCCATCCACAATGCAAACTCATCATCAACTGCATCAAACAAGTTCTTCTCATCATCCGTTTTCAGAAATACTGCAAAATGACCAGCTTGGTCGTTTCCAGGGCCTCGACATTGGCAGCAAAGGATCAACTCTCGTGAAGTCGGAAGGCCCCTCGCTCTCTGCGAGCGAGAGTAGCACCACATTTTGA 1095 0.5416 MQDPSSNSISNPNPNPNPHNANAAPQLPRPPPSTAATTAGAGASSSSLFARSGGSHHRRAHSEVSFRLPEDMMDLSPSDPFAGGSSTASMEEIGSEDDLFSTYIDVDKFGGGNGADPNGERERSPARPRHRQSSSVDFGEIMDAKKAMPPDKLAELWTLDPKRAKRILANRQSAARSKERKARYIQELERKVQTLQTEATTLSAQLTLYQRDTTGLSSENTELKLRLQAMEQQAQLRDALNDALKKEVERLKVATGEMMSHTESFNLGMHQMPFTGSSFIPISPQSGPSSHQNMQMPPPFSHSPSTMQTHHQLHQTSSSHHPFSEILQNDQLGRFQGLDIGSKGSTLVKSEGPSLSASESSTTF 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1942 364 MobiDBLite consensus disorder prediction 344 364 - -
Aed3g1942 364 MobiDBLite consensus disorder prediction 1 136 - -
Aed3g1942 364 MobiDBLite consensus disorder prediction 347 364 - -
Aed3g1942 364 SUPERFAMILY Leucine zipper domain 162 213 IPR046347 GO:0003700|GO:0006355
Aed3g1942 364 Pfam bZIP transcription factor 162 220 IPR004827 GO:0003700|GO:0006355
Aed3g1942 364 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 11 361 - -
Aed3g1942 364 MobiDBLite consensus disorder prediction 120 136 - -
Aed3g1942 364 Coils Coil 178 205 - -
Aed3g1942 364 MobiDBLite consensus disorder prediction 37 52 - -
Aed3g1942 364 MobiDBLite consensus disorder prediction 284 321 - -
Aed3g1942 364 SMART brlzneu 158 222 IPR004827 GO:0003700|GO:0006355
Aed3g1942 364 CDD bZIP_plant_RF2 163 212 IPR044759 GO:0003700|GO:0006355
Aed3g1942 364 PANTHER ATBZIP TRANSCRIPTION FACTOR 11 361 - -
Aed3g1942 364 MobiDBLite consensus disorder prediction 1 17 - -
Aed3g1942 364 MobiDBLite consensus disorder prediction 18 32 - -
Aed3g1942 364 Gene3D - 162 211 - -
Aed3g1942 364 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 160 223 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1942 Aed-Chr3 23623519 23625978 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1942 1 364 bZIP Transcription Factor Family AT2G40620 49.510 5.23e-101 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Aed3g1942 bZIP_1 3e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1942 - - gmx:100815680 552.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g2163 4 24421100 24424957 Aed3g1942 3 23623519 23625978 PCT