Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1941 ATGGCACCCCATGCATCTTCTTTTGTGCTACTTCTTCTCATTTTTCTCTTTGTTGAAATGAACTTCAAGGGTGCCACTGCTGACTATGGTGGTTGGCAGGGTGGTCATGCTACTTTCTATGGTGGTGGTGATGCTTCTGGCACAATGGCTCTGAGCACTGCTTTGTTCAACAATGGCTTGAGTTGTGGGGCATGTTATGAAATGAGGTGTGATGATGACCCAAGATGGTGCAAGCCTGGCACCATTGTTGTCACTGCTACAAACTTCTGTCCTCCGAACTTTGCTTTGGCCAACAATAATGGTGGTTGGTGCAACCCTCCTCTCCAACACTTTGATATGGCAGAACCTGCATTCCTTCAAATTGGTCAGTATAGAGCTGGAATTGTGCCTGTGGCATTTAGAAGAGTGCCGTGTGTGAAAAAGGGAGGAATAAGGTTCACAATTAATGGCCACTCTTACTTCAACCTGGTTTTGATCACCAACGTCGCGGGTGCAGGGGATGTCCATGCAGTGTCAATCAAAGGGTCCAGAACTAGCTGGCAACCCATGTCAAGAAACTGGGGTCAAAATTGGCAGAGCAACTCTTACCTCAACGGACAAACCCTCTCTTTTCAAGTCACCGCCAGCGACGGTAGAATTCTCACAAGCACCAACGTGGCACCATCTAACTGGCAGTTCGGTCAGACCTTCCAAGGGGCTCAGTTTTAG 708 0.4802 MAPHASSFVLLLLIFLFVEMNFKGATADYGGWQGGHATFYGGGDASGTMALSTALFNNGLSCGACYEMRCDDDPRWCKPGTIVVTATNFCPPNFALANNNGGWCNPPLQHFDMAEPAFLQIGQYRAGIVPVAFRRVPCVKKGGIRFTINGHSYFNLVLITNVAGAGDVHAVSIKGSRTSWQPMSRNWGQNWQSNSYLNGQTLSFQVTASDGRILTSTNVAPSNWQFGQTFQGAQF 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1941 235 PANTHER EXPANSIN 8 235 - -
Aed3g1941 235 Pfam Expansin C-terminal domain 144 221 IPR007117 -
Aed3g1941 235 PRINTS Expansin/Lol pI family signature 180 194 IPR007118 GO:0005576
Aed3g1941 235 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Aed3g1941 235 PRINTS Expansin/Lol pI family signature 218 232 IPR007118 GO:0005576
Aed3g1941 235 SUPERFAMILY PHL pollen allergen 140 232 IPR036749 -
Aed3g1941 235 Gene3D - 18 138 IPR036908 -
Aed3g1941 235 Pfam Lytic transglycolase 49 132 IPR009009 -
Aed3g1941 235 Gene3D - 142 235 IPR036749 -
Aed3g1941 235 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 153 232 IPR007117 -
Aed3g1941 235 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 24 143 IPR007112 -
Aed3g1941 235 PRINTS Expansin signature 82 92 IPR002963 GO:0009664
Aed3g1941 235 PRINTS Expansin signature 189 210 IPR002963 GO:0009664
Aed3g1941 235 PRINTS Expansin signature 43 57 IPR002963 GO:0009664
Aed3g1941 235 PRINTS Expansin signature 101 118 IPR002963 GO:0009664
Aed3g1941 235 PRINTS Expansin signature 70 81 IPR002963 GO:0009664
Aed3g1941 235 PRINTS Expansin signature 118 131 IPR002963 GO:0009664
Aed3g1941 235 PRINTS Expansin signature 218 234 IPR002963 GO:0009664
Aed3g1941 235 PRINTS Expansin signature 142 154 IPR002963 GO:0009664
Aed3g1941 235 PRINTS Expansin signature 154 175 IPR002963 GO:0009664
Aed3g1941 235 SMART dpbb_1 48 133 IPR007112 -
Aed3g1941 235 PANTHER EXPANSIN-A15 8 235 IPR002963 GO:0009664
Aed3g1941 235 SUPERFAMILY Barwin-like endoglucanases 11 161 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1941 Aed-Chr3 23615815 23618340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1941 4 235 Expansin Gene Family AT2G40610 71.429 1.17e-131 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1941 - - gmx:100816848 460.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g2173 4 24556290 24558819 Aed3g1941 3 23615815 23618340 PCT