Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1939 ATGGGAGAACAATGTTATGTAGAAACCGACCCAACTGGTCGCTATGGCAGGTTTGGAGATGTTCTTGGAAAAGGAGCAATGAAGACAGTGTACAAAGCAATTGATGAGGTGCTTGGAATTGAGGTAGCATGGAACCAGGTGAGGCTCAACGAGGCGCTTCGCTCGCCGGAAGATTTGCAGCGGCTTTACTCAGAGGTTCATCTCCTCAGCACCCTCAAGCACCAGTCCATCATAAGATTCTACACTTCTTGGATTGATATTGATAACAGGGCCTTCAACTTCATCACAGAATTGTTCACATCAGGGTCGCTGAGAGAATACAGGAAGAAGTATAAGCGCGTCAGCATACAAGCTATAAAGAATTGGGCTCGCCAAATCTTACAAGGTCTTGTTTATCTACATTGCCATGATCCACCTGTGATCCATAGGGACCTCAAATGTGATAACATATTTGTCAATGGCCATCTTGGACAAGTAAAAATTGGTGACCTAGGACTGGCTGCAATTCTCCACGGTTCCCAATCAGCACACAGTGTCATAGAATATAATGAACTAGCTGATGTGTACTCATTTGGCATGTGTGTGTTGGAAATGCTCACATCTGAATATCCATATAGTGAATGTTCTAATCCAGCACAAATCTACAAGAAAGTGACATCGGGAAAACTACCAATGGCCTTTTTCCGGGTTGAAGACATGGAAGCACAAAGGTTTATTGGAAAATGCTTACTACCTGCAGAAAAGAGACCATCAGCAAAAGAATTGTTGCTTGACCCTTTTATTGTGTCTGATGATCCATCATCAGCAGTGAAGAATGTATTTTTTCCCTTTGACATTGTCAGTGACACCCCTATTGATGTTGCAACTGAGATGGTGAAAGAGTTGGAGATTACAGATTGGGAGCCTTTCGAGATTGCAAATATGATTGATAGAGAGATATCTGCTCTACTACCTCACAGGAGGCAAAGTAGCAGTTCAGATGCCTTCCACACATTCAATTATCTAGATGATGATTGTGATGATGATGGACCTCATCATCATTTCCGCTCGTTCTCTTCTAGTTCATCATTCCAAGAATCAATGTCAGATTTAGTGAGTAAAGCTGAGGAAATATCAAAGTACAACATGCCATCTTTGAGAAAATTAGACAAACTTCCCATCATAAAGAGTCACAACAAGGGCAAAAAGGTTTCCTCTGGCGAAGACTTGAGCAATTTCAACCAGTGTAAACTCATGGTAGGATCACAGGTTCCTTTCACTAGTAAAAATAATAAGATGATGATGAACAATCATCATAGATTAACAAGGAACAGGTCCTTGATTGATATAAGGAGCCAGCTATTGCACCGATCACTAGTTGAAGAGGTGAACAAAAGACGGTTATTCAAGACAGTTGGTGCTGTGGAAAATATTGGATTTCAGGCACCTTGTGATGTTAAGACAAAAAGGTCACAGCATGCATGTGTTGCTCCAAATGAAAACTCTTCAAGAAGTGGCAAAGGGAGAAAAAATTAA 1515 0.4119 MGEQCYVETDPTGRYGRFGDVLGKGAMKTVYKAIDEVLGIEVAWNQVRLNEALRSPEDLQRLYSEVHLLSTLKHQSIIRFYTSWIDIDNRAFNFITELFTSGSLREYRKKYKRVSIQAIKNWARQILQGLVYLHCHDPPVIHRDLKCDNIFVNGHLGQVKIGDLGLAAILHGSQSAHSVIEYNELADVYSFGMCVLEMLTSEYPYSECSNPAQIYKKVTSGKLPMAFFRVEDMEAQRFIGKCLLPAEKRPSAKELLLDPFIVSDDPSSAVKNVFFPFDIVSDTPIDVATEMVKELEITDWEPFEIANMIDREISALLPHRRQSSSSDAFHTFNYLDDDCDDDGPHHHFRSFSSSSSFQESMSDLVSKAEEISKYNMPSLRKLDKLPIIKSHNKGKKVSSGEDLSNFNQCKLMVGSQVPFTSKNNKMMMNNHHRLTRNRSLIDIRSQLLHRSLVEEVNKRRLFKTVGAVENIGFQAPCDVKTKRSQHACVAPNENSSRSGKGRKN 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1939 504 Gene3D Phosphorylase Kinase; domain 1 2 97 - -
Aed3g1939 504 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 267 370 - -
Aed3g1939 504 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK4-RELATED 403 498 - -
Aed3g1939 504 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Aed3g1939 504 SUPERFAMILY Protein kinase-like (PK-like) 17 301 IPR011009 -
Aed3g1939 504 Pfam Protein kinase domain 20 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed3g1939 504 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK4-RELATED 267 370 - -
Aed3g1939 504 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK4-RELATED 3 267 - -
Aed3g1939 504 ProSiteProfiles Protein kinase domain profile. 16 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed3g1939 504 SMART serkin_6 16 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed3g1939 504 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 3 267 - -
Aed3g1939 504 Gene3D Transferase(Phosphotransferase) domain 1 99 267 - -
Aed3g1939 504 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 403 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1939 Aed-Chr3 23585216 23589664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1939 6 482 MAP Kinase Kinase Kinase AT5G58350 50.524 1.34e-180 517
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Aed3g1939 Pkinase 5.8e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1939 K08867 - gmx:100272203 810.061
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g2174 4 24561593 24566862 Aed3g1939 3 23585216 23589664 PCT