Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1938 ATGGGTAACAACAGGTTCAAGTTGTCAGATATGATGCCAAATGCTTGGTTTTACAAGCTGAAAGACATGAGTAGCAGATCAAGGAAGATGAATGGTTCTCATGTTGTGAAGAGTAAAGTGTCTTCACCAACAACATCACAAAGGTCGCAGCCAAGATATTCACACTATTTCTCCACTGAGCCTATAAGAGCTGGTAAGCTATACAACACTCCCATTCACACCAAAGACTTGGACTTTCCATTCACTGATTCACCTAGAAGGTCTTCCAAGAGAAGGGCTAGGAGAAAAACCATTTACAAGCCTTCTCCTACTGTTGTTTCAATTTCATCCTCTTTCATTCCCACGTCAAATCATTGGATCAAGCCATGTCAAGTTCAGTCACCAGATTATGATGTGTCTTCAGTTGAAAGCTCTTCTGAATCTGATCTTCATGGATATGCTTATTCTGAGTCTGAATGTGACAGCTTTTCTGTTCCTGATTTGCTTAATGGAATAGACACTAGTTGCAGCTGCAGAGTTAGCTCTTCCACTAATGACATCATCATTGACATGAACAGTGAGTCCTTCCTAGGGAATCCCGAAAAGCAAGATGGTTTTGATGCAATTTCACAGCTTGGTCTTGCTCCAATACTGACAAGGCCAATGAAGTTTGATGATGATAAGGTCATTGAAGTCGCCGTGTTCCGAAGTTCAACGGATTTTGATGAACTGCAGGATGATCAGTCTTTCTCAATTGAGATTAACAAAGAGGAATGCAATAATAGAAATCAAAGGAGGAGAAAAAGCAGTCATAGAAAGCCTTTTGCTAATTCTGCAGGCATAAGGCTTAGAGTCAATTCTCCAAAACTTGCAAGCAGAAAAATTCAAGCATGTGCAAGAAGAAGCGTTTCATCCACTTCAAGCAAAGCTTCAAGGAGTACAGGCTTCCCCGATGGATTTGCTGTTGTTAAGTCCTCATTTGATCCACAGGGTGACTTCAGGGAGTCAATGGTGGAGATGATTGTGGAGAACAATATCCGCGCATCGAAAGATTTGGAGGACTTGCTTGCCTGCTATCTTTCCCTCAATTCAAGTGACTACCATGATCTCATTGTTAAAGCATTTGAGCAAATTTGGTTTGACATGGCTCAACTTAGAATGTAA 1143 0.4103 MGNNRFKLSDMMPNAWFYKLKDMSSRSRKMNGSHVVKSKVSSPTTSQRSQPRYSHYFSTEPIRAGKLYNTPIHTKDLDFPFTDSPRRSSKRRARRKTIYKPSPTVVSISSSFIPTSNHWIKPCQVQSPDYDVSSVESSSESDLHGYAYSESECDSFSVPDLLNGIDTSCSCRVSSSTNDIIIDMNSESFLGNPEKQDGFDAISQLGLAPILTRPMKFDDDKVIEVAVFRSSTDFDELQDDQSFSIEINKEECNNRNQRRRKSSHRKPFANSAGIRLRVNSPKLASRKIQACARRSVSSTSSKASRSTGFPDGFAVVKSSFDPQGDFRESMVEMIVENNIRASKDLEDLLACYLSLNSSDYHDLIVKAFEQIWFDMAQLRM 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1938 380 MobiDBLite consensus disorder prediction 29 53 - -
Aed3g1938 380 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 313 375 IPR006458 -
Aed3g1938 380 Pfam DNA-binding domain 1 49 IPR025830 GO:0003677
Aed3g1938 380 ProSiteProfiles OVATE domain profile. 315 374 IPR006458 -
Aed3g1938 380 Pfam Transcriptional repressor, ovate 319 375 IPR006458 -
Aed3g1938 380 PANTHER TRANSCRIPTION REPRESSOR OFP3 3 379 - -
Aed3g1938 380 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 3 379 IPR038933 GO:0045892
Aed3g1938 380 MobiDBLite consensus disorder prediction 249 268 - -
Aed3g1938 380 MobiDBLite consensus disorder prediction 28 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1938 Aed-Chr3 23581961 23583103 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Aed3g1938 Ovate 9.9e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1938 - - gmx:100780926 636.336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g1938 3 23581961 23583103 Aed3g1938 3 23581961 23583103 ECH
Aed4g2175 4 24570380 24571519 Aed3g1938 3 23581961 23583103 PCT