Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1933 ATGACAGAATCCGAACACGCGACGACGGAGAACACCGCCCTGTTCGGAAAATACGAGGTCGGAAGGCTCCTAGGATGCGGGGCTTTCGCGAAGGTGTACCACGCGCGCAACACCGAGACTGGGCTGAGCGTGGCCGTGAAAGTGATAAGCAAGAAGAAGCTAACCGCGACGGGAATGGCCTCCAACGTGAAGCGCGAGATCGCGATCATGAGCCGCCTCCACCACCCCAACATCGTGAAACTCCACGAAGTGCTGGCCACGAAGACCAAGATTTACTTCATCTTGGAATTCGCGAAAGGCGGCGAGCTTTTCGCGAGAATCTCCAAGGGCAGATTCAGCGAAGATCTCGCGAGACGGTTTTTTCAGCAGCTGATCTCCGCCGTCGGGTACTGCCACGCTCGCGGCGTCTTCCACCGTGACCTGAAGCCGGAGAATCTCCTCCTGGACGAGCTGGGTAACCTTAAAGTCTCCGACTTTGGACTCAGCGCGGTGAAGGATCAGATAGGGGCTGATGGGTTGCTTCACACGCTGTGTGGGACCCCTGCTTACGTGGCACCCGAGATTCTGGGGAAGAAGGGTTACAACGGGGCTAAGGTTGATGTTTGGTCCTGTGGGATTATCCTTTTTGTTCTCGTTGCTGGGTATCTTCCGTTTAATGATCCGAATCTAATGGTGATGTACAAGAAGATTTACAAAGGGGAGTTTCGGTGTCCGAGGTGGTTTTCGGCGGAGTTAAAGAGGCTTCTGACGAGGTTGTTGGATACGAATCCCGATACGAGGATCACGGTCGATGAGATTATGAAGGACGCGTGGTTTAAGAAGGGGTACAAGGAGGTAAAGTTTGGTGATTTGGGTTTGGAGTGGAAGAGTGAGGGTGAGGATGTGAAGGATTTGAATGCTTTTGATATCATTTCGTTTTCAACTGGGTTGAATCTCTCTGGGTTGTTCGATTCGTCGCGTGGGGTGGTAGAAGGGGAGAGGTTTTTGCTCAAGGACTCGCCGGAGAAGTTGGTGGAGACGGTGGTGGCGGCGGCGGAGAAGGAGGGGCTTGTGGTGAGGATGAGGAAGGAGTGTGGGGTGGAGTTGGAGGGGTGTAACGGGGATTTCGCAGCTTTGGTGGAGGTTTACCGGTTACCTGGTGAACTGGTTGTGGTGGAGGTTAGAAGAAGGGATGGGAATGGTGGCGTTTTCAGGGATGTTTGGAGGAATAAGTTGAGGCCGTGTCTCTGTGCCGCCAGTAGTAGCAGTACGACGTCGGATCGGGAAGGAACTGTGGCGCAGCCGGTTGCCGGTGAATCATGA 1302 0.5407 MTESEHATTENTALFGKYEVGRLLGCGAFAKVYHARNTETGLSVAVKVISKKKLTATGMASNVKREIAIMSRLHHPNIVKLHEVLATKTKIYFILEFAKGGELFARISKGRFSEDLARRFFQQLISAVGYCHARGVFHRDLKPENLLLDELGNLKVSDFGLSAVKDQIGADGLLHTLCGTPAYVAPEILGKKGYNGAKVDVWSCGIILFVLVAGYLPFNDPNLMVMYKKIYKGEFRCPRWFSAELKRLLTRLLDTNPDTRITVDEIMKDAWFKKGYKEVKFGDLGLEWKSEGEDVKDLNAFDIISFSTGLNLSGLFDSSRGVVEGERFLLKDSPEKLVETVVAAAEKEGLVVRMRKECGVELEGCNGDFAALVEVYRLPGELVVVEVRRRDGNGGVFRDVWRNKLRPCLCAASSSSTTSDREGTVAQPVAGES 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1933 433 SUPERFAMILY Protein kinase-like (PK-like) 15 279 IPR011009 -
Aed3g1933 433 ProSiteProfiles Protein kinase domain profile. 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed3g1933 433 PANTHER - 4 416 - -
Aed3g1933 433 SMART serkin_6 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed3g1933 433 Gene3D Transferase(Phosphotransferase) domain 1 8 297 - -
Aed3g1933 433 MobiDBLite consensus disorder prediction 413 433 - -
Aed3g1933 433 Pfam NAF domain 297 353 IPR004041 GO:0007165
Aed3g1933 433 Gene3D Kinase associated domain 1, KA1 298 412 - -
Aed3g1933 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Aed3g1933 433 CDD CIPK_C 299 410 - -
Aed3g1933 433 Pfam Protein kinase domain 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed3g1933 433 ProSiteProfiles NAF domain profile. 293 317 IPR018451 GO:0007165
Aed3g1933 433 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 14 4 416 - -
Aed3g1933 433 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1933 Aed-Chr3 23549467 23550768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1933 11 419 CBL-interacting serine-threonine protein kinases AT2G30360 65.321 0.0 539
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Aed3g1933 Pkinase 6.3e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1933 - - gmx:100815088 770
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g1933 3 23549467 23550768 Aed3g1933 3 23549467 23550768 ECH
Aed4g2179 4 24592021 24594339 Aed3g1933 3 23549467 23550768 PCT