Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1927 ATGCATTATTATTTGGTTTTAACATGCAGTTTTGTGTTTTTTTTTACCCCCAAAGATAGATTAGATGAGATAACAAGGGTGAGAGCAGAGGGAGAAATGGGAAGGAAGAATTTCTATGGTCCAACAACAACTCCAGGGACAACCTTAAACACAGTTACCCCTTGTGCTGCATGCAAGCTTTTGAGAAGAAGGTGTGCTGAAGAATGCCCTTTCTCTCCTTATTTCTCACCACATGAGCCTCAGAAGTTTGCAGCAGTTCACAAAGTGTTTGGTGCAAGCAATGTCTCCAAGATGCTAATGGAGGTACCAGAGGGGCAAAGAGGTGATGCAGCAAATAGCCTTGTTTATGAAGCAAACTTGAGGCTAAGAGATCCTGTGTATGGATGCATGGGTGCAATATCAGCTTTGCAGCAACAAGTTCAAACTTTACAAGCAGAACTAAATGCAATAAGGGCTGAGATACTAAAATACAAATATAGAGAGGCTGCAAGTATCATTAATTCTTCTCATCATCATGTTGCTTTGGTTTCTTCTGCTGAGGCAATATCAATAGCAGTAGACTCACAACAAGGTCTTTCTCAACCTCAACCTCAACCTCTTCTTCATCTTCCACCACAACCAAAACCATTGCCTTCTCCTCATCCTCCTCAACAAAAACAGCCACTACCTTCTGCTTCTGTTGTCCTTTCATCCTTGTCCTCATCTTCAGCTTCTTCTGTGTACACTCCTCCTAAAAACTCATCAATGAGCCTTGGATCCATTTCCACCACTGAAAATGTCCCATACTTTGTTTAA 795 0.4151 MHYYLVLTCSFVFFFTPKDRLDEITRVRAEGEMGRKNFYGPTTTPGTTLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKMLMEVPEGQRGDAANSLVYEANLRLRDPVYGCMGAISALQQQVQTLQAELNAIRAEILKYKYREAASIINSSHHHVALVSSAEAISIAVDSQQGLSQPQPQPLLHLPPQPKPLPSPHPPQQKQPLPSASVVLSSLSSSSASSVYTPPKNSSMSLGSISTTENVPYFV 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1927 264 ProSiteProfiles LOB domain profile. 53 154 IPR004883 -
Aed3g1927 264 Coils Coil 133 160 - -
Aed3g1927 264 MobiDBLite consensus disorder prediction 221 264 - -
Aed3g1927 264 PANTHER LOB DOMAIN PROTEIN 41 263 - -
Aed3g1927 264 MobiDBLite consensus disorder prediction 198 220 - -
Aed3g1927 264 Pfam Lateral organ boundaries (LOB) domain 54 150 IPR004883 -
Aed3g1927 264 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 41 263 - -
Aed3g1927 264 MobiDBLite consensus disorder prediction 188 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1927 Aed-Chr3 23515763 23516664 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1927 45 165 AS2 family AT2G30340 84.298 1.48e-74 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Aed3g1927 LOB 1.4e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1927 - - ccaj:109795340 326.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g1927 3 23515763 23516664 Aed3g1927 3 23515763 23516664 ECH