Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1924 ATGGAGATATCTTTGTTAAAGGTGCTATCTGATGCCATATCCTCATTTTCGCATTTAGCATTTTCTGAAAAAATGAAGTCAGAACCTGTATCGAAGTATTACCAAAAGGCAGAGAAGATGCTTAAGTTGTTGAAGCCGATTATTGATACTACTGTTTTTTCTGATTTTTCTTCTAACGAAGTGCTTAGTAAGCTATTCGAGGAACTTGGTCTGGCTGTTGATGAGTTGAGGGAGCTTATTCTGAACTGGCATCCATTATCTAGCAAATTCTACTTTGTTATTCAAGTTGATCCCTTGATATCAACAATTCAGGATTTGGGTCTCAGCATTTTACAACAGCTGAAGGCTTCACCGCAAAGTCTCCCTGATAATTTGGGCAATGAAACATCATCAACCATTAAAAAAGCTATTATGGAACAACTGGAAGGTGTAGGACCAAGTACAGAGGTTCTGGAAAACATTGCTGAGAATCTGGGTCTAAGGTCTAATCAAGAGGTCCTGATTGAGGCTGTAGTGCTTGATAAGTTGAAGGAGCATGCTGAACAACTTGAAAATACTGCAGAATCTGAATATATTGATCAAATGATCTCGATTGTAAATCGTATGCATGAGCATCTTGTTATGCTTAAGCAAGCTCAGAGCTCTATCCCAGTGTCAGTACCTGCTGATTTTTGCTGTCCTCTCTCTTTGGAATTGATGACAGATCCAGTCATTGTGGCATCGGGGCAAACATATGAGCGGGCTTTCATCAAGAACTGGATTGATCTAGGGCTTATGGTTTGCCCAAAGACACGCCAGACTCTGGTTCACACCAATCTAATACCTAACTACACTGTCAAGGCATTTATTGCTAACTGGTGTGAATCAAATGATGTGAAGCTTGTTGATCCCATTAAGTTCAAAACCTTAAATCCACTATCTCCCTTTCATGGGTCTATGGAGTCTGGTTTGACCAAGGATTCACCTGTTATAACTAGTGCTGAAGTCCACCAAGAACGAACATCACCATTGCATGCCTCTTCAACTCCAGGTGGTTCCTTAAATGACGCAGTTAATGAGCAGCACATGGATCTTGAAAGAATATCATCCACAGGTTCAGATGACGAGTCTGCCAGCTCAGATGAAGGGAGTGTGGATTCAGTTGTCCAATCATTAATGTCACAAAGGGAATCCTCCAATGCCTTAAGCTCAGAACAATCTCAAACTGATGTTAGAACTACTACTGATGACAACAATACTCCTCTATTGTCAACCAGTTCAGTCCACAGTCAAGATGCTTCGGGGGAATTGAATTCAGGGCCAGATGCTGTTGCCATGCCAGCTCGTCATAGAGAACCTGAGTTTTCACCCCAATTAGCAGTACCAAGGTCTCGAAGCCATAATATATGGCAAAGGTCATCTGAGCGGCTTGTTCCTAGGGCAGTGTCTAATCCTATTGAAACAAGAGCTGATCTGCCTGCTGCTGAAACCCAGGTTCGGAAATTAATGGAGCAGTTAAAGAGCGATTCTATCGATTCTAAGAGAGAGGCAACATCAGAACTCCGCCTTCTTGCTAAGCACAGTATGGATAACCGAATTGTGATTTCAAGTTGTGGAGGCATTAGCGTATTAGTTGATTTACTGCAATCAACTGATACTACGATCCAGGAAAATTCTGTTACAGCACTCCTTAACTTATCAATCAACGATAACAACAAAGCCGCTATTGCAAATGCCGGTGCAATTGAACCTTTGATTCATGTTCTTGAGACAGGGAGTCCAGAAGCCAAGGAGAATGCAGCTGCCACTCTCTTCAGCCTCTCGGTTACTGAGGAAAACAAGATCAGGATAGGCAGGTCTGAGGCAATTAGACCACTGGTTGATTTATTGGGGAACGGAACCCCTAGAGGGAAGAAAGATGCTGCAACTGCTTTGTTTAATTTGTCAATATTTCATGAAAACAAGGATCGGATTGTGCAAGCCGGTGCTGTGAAACACCTTGTAGAGTTAATGGACCCGGCAGCCGGAATGGTTGATAAGGCAGTGGCCGTTTTAGCAAATCTTGCTACAATAACAGAAGGCAAAACAGCAATTGGTCAGGAAGGCGGCATTCCTGTTTTGGTCGAGGTGGTCGAGTTGGGTTCTGCAAGAGGAAAGGAGAACGCAGCAGCAGCTCTTCTACATCTATGCTCAGACAATCACAGATACTTAAACATGGTGCTCCAAGAAGGAGCTGTGCCCCCTTTGGTATCATTGTCACAATCAGGCACCCCAAGGGCCAAAGAAAAGGCCTTGGCTCTCCTTAATCAATTTAGAAACCATAGACATGGCAACGCTGGAAGAGCTTGA 2328 0.4308 MEISLLKVLSDAISSFSHLAFSEKMKSEPVSKYYQKAEKMLKLLKPIIDTTVFSDFSSNEVLSKLFEELGLAVDELRELILNWHPLSSKFYFVIQVDPLISTIQDLGLSILQQLKASPQSLPDNLGNETSSTIKKAIMEQLEGVGPSTEVLENIAENLGLRSNQEVLIEAVVLDKLKEHAEQLENTAESEYIDQMISIVNRMHEHLVMLKQAQSSIPVSVPADFCCPLSLELMTDPVIVASGQTYERAFIKNWIDLGLMVCPKTRQTLVHTNLIPNYTVKAFIANWCESNDVKLVDPIKFKTLNPLSPFHGSMESGLTKDSPVITSAEVHQERTSPLHASSTPGGSLNDAVNEQHMDLERISSTGSDDESASSDEGSVDSVVQSLMSQRESSNALSSEQSQTDVRTTTDDNNTPLLSTSSVHSQDASGELNSGPDAVAMPARHREPEFSPQLAVPRSRSHNIWQRSSERLVPRAVSNPIETRADLPAAETQVRKLMEQLKSDSIDSKREATSELRLLAKHSMDNRIVISSCGGISVLVDLLQSTDTTIQENSVTALLNLSINDNNKAAIANAGAIEPLIHVLETGSPEAKENAAATLFSLSVTEENKIRIGRSEAIRPLVDLLGNGTPRGKKDAATALFNLSIFHENKDRIVQAGAVKHLVELMDPAAGMVDKAVAVLANLATITEGKTAIGQEGGIPVLVEVVELGSARGKENAAAALLHLCSDNHRYLNMVLQEGAVPPLVSLSQSGTPRAKEKALALLNQFRNHRHGNAGRA 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1924 775 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 219 294 IPR013083 -
Aed3g1924 775 PANTHER U BOX DOMAIN-CONTAINING 9 338 - -
Aed3g1924 775 MobiDBLite consensus disorder prediction 362 459 - -
Aed3g1924 775 Pfam U-box domain 220 290 IPR003613 GO:0004842|GO:0016567
Aed3g1924 775 Gene3D - 473 772 IPR011989 -
Aed3g1924 775 SMART arm_5 603 643 IPR000225 GO:0005515
Aed3g1924 775 SMART arm_5 684 724 IPR000225 GO:0005515
Aed3g1924 775 SMART arm_5 644 683 IPR000225 GO:0005515
Aed3g1924 775 SMART arm_5 521 561 IPR000225 GO:0005515
Aed3g1924 775 SMART arm_5 725 766 IPR000225 GO:0005515
Aed3g1924 775 SMART arm_5 562 602 IPR000225 GO:0005515
Aed3g1924 775 MobiDBLite consensus disorder prediction 328 350 - -
Aed3g1924 775 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 9 338 - -
Aed3g1924 775 MobiDBLite consensus disorder prediction 365 430 - -
Aed3g1924 775 PANTHER U BOX DOMAIN-CONTAINING 460 770 - -
Aed3g1924 775 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 532 574 IPR000225 GO:0005515
Aed3g1924 775 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 573 615 IPR000225 GO:0005515
Aed3g1924 775 SUPERFAMILY RING/U-box 209 297 - -
Aed3g1924 775 CDD RING-Ubox_PUB 224 266 IPR045210 -
Aed3g1924 775 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 460 770 - -
Aed3g1924 775 SUPERFAMILY ARM repeat 492 764 IPR016024 -
Aed3g1924 775 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 655 696 IPR000225 GO:0005515
Aed3g1924 775 ProSiteProfiles U-box domain profile. 219 293 IPR003613 GO:0004842|GO:0016567
Aed3g1924 775 SMART Ubox_2 223 286 IPR003613 GO:0004842|GO:0016567
Aed3g1924 775 MobiDBLite consensus disorder prediction 328 349 - -
Aed3g1924 775 Coils Coil 173 193 - -
Aed3g1924 775 Pfam Armadillo/beta-catenin-like repeat 562 601 IPR000225 GO:0005515
Aed3g1924 775 Pfam Armadillo/beta-catenin-like repeat 523 560 IPR000225 GO:0005515
Aed3g1924 775 Pfam Armadillo/beta-catenin-like repeat 604 642 IPR000225 GO:0005515
Aed3g1924 775 Pfam Armadillo/beta-catenin-like repeat 646 682 IPR000225 GO:0005515
Aed3g1924 775 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 614 656 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1924 Aed-Chr3 23503251 23508075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1924 180 775 U-box Gene Family AT2G23140 59.565 0.0 694
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1924 - - gmx:100777715 1286.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g2184 4 24626124 24631885 Aed3g1924 3 23503251 23508075 PCT