LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed3g1914	ATGGAATCCCTTGATGAAGAGCATGCTGCAAAATTACTTAGAGCTCAAACCCACATATGGAATCACATATTTAGCTTCATAAACTCCATGTCCCTTAAATGTGTAGTTGAGTTAGGCATACCAGATATCATACACAACTATGGCCAACCCATGCCACTCTCAAATCTCATTGCTTCACTATCAATCCACCAATCCAAAACTCACTTCATCCATCGCTTGATGCGAATCATGGTCCATTCTGGCTTCTTCTCTCAACAAGAGAATGAGCTAGAAGAAGTGAAGTATGTGCTAACTGATGCATCTTTACTACTGCTTAAGAACGATCCCATGAGTGTGACACCTTTCTTGCTTGGCATGCTTGATCCAATTTTGACTAATCCATGGAATCAATTCTCTACTTGGTTCAAAAATGGTGACCCTACACCATTTGAAACGACACACGGGATGACGCTTTGGGGTTATGCTGGTGCTGATCCAAAACTTAATAACTTGTTCAATGATGCCATGGCAAGTGACGCTCGATTAGTCACTAGTTTGGTGATTGAGAAGTGCAAGGGTGTGTTCATGGGATTGGAGTCATTGGTTGATGTTGGAGGTGGCACAGGGACCATGGCAAAAGCCATTGCTAAATCATTCCCACATATGCAGTGCATTGCATTTGATCTCCCACATGTTGTTTCTGTCTTGGAACCAAGTGAGAACCTTAAATTTGTTGGAGGGGACATGTTTGAGGCAATTCCTCCGGCTGATGCCATTTTGTTGAAGTGGATATTGCATGACTGGAATGATGAGGAGTGTGTGAACATATTGAAGAAATGCAAGGAGGCAATAAAGGGGAAGGGCAAAGAAGGGAAAGTGATCATCATAGACATAGTGGTGGAAAATGATGAGAAGAGAGATGATGAATCAATTGAAACACAACTCTTCTTTGATATGCTGATGATGGTGTTGGTTACTGGAAAAGAGAGACACAAGAAGGAATGGGCTAAGTTGATTTCCTCTGCTGGTTATAATAGCTACAAGATAACTCATGTTTTGGGCTTAAGGTCAATCATTGAGATCTATCCATAG	1071	0.4155	MESLDEEHAAKLLRAQTHIWNHIFSFINSMSLKCVVELGIPDIIHNYGQPMPLSNLIASLSIHQSKTHFIHRLMRIMVHSGFFSQQENELEEVKYVLTDASLLLLKNDPMSVTPFLLGMLDPILTNPWNQFSTWFKNGDPTPFETTHGMTLWGYAGADPKLNNLFNDAMASDARLVTSLVIEKCKGVFMGLESLVDVGGGTGTMAKAIAKSFPHMQCIAFDLPHVVSVLEPSENLKFVGGDMFEAIPPADAILLKWILHDWNDEECVNILKKCKEAIKGKGKEGKVIIIDIVVENDEKRDDESIETQLFFDMLMMVLVTGKERHKKEWAKLISSAGYNSYKITHVLGLRSIIEIYP	356

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed3g1914	356	PANTHER	O-METHYLTRANSFERASE	8	356	-	-
	Aed3g1914	356	Pfam	Dimerisation domain	30	78	IPR012967	GO:0046983
	Aed3g1914	356	Gene3D	-	2	104	IPR036388	-
	Aed3g1914	356	SUPERFAMILY	"Winged helix" DNA-binding domain	10	109	IPR036390	-
	Aed3g1914	356	ProSiteProfiles	SAM-dependent O-methyltransferase class II-type profile.	20	356	IPR016461	GO:0008168
	Aed3g1914	356	PIRSF	O-mtase	1	356	IPR016461	GO:0008168
	Aed3g1914	356	CDD	AdoMet_MTases	194	293	-	-
	Aed3g1914	356	Gene3D	Vaccinia Virus protein VP39	105	356	IPR029063	-
	Aed3g1914	356	PANTHER	O-METHYLTRANSFERASE	8	356	IPR016461	GO:0008168
	Aed3g1914	356	Pfam	O-methyltransferase domain	128	338	IPR001077	GO:0008171

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed3g1914	Aed-Chr3	23414369	23415988	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed3g1914	30	342	Monolignol Biosynthesis Gene Families	AT5G54160	32.298	4.84e-51	172

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed3g1914	-		K16040	gmx:100781008	605.52

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