Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1905 ATGGCATCTTCTTCTGGCAGTTTAGACACCTCTGCAAGTGCAAACTCCTTCACCAACTTCACCTTCCCCACACACCCTTTCATGACCACTTCTTTCGCTGACCTCCTCGCTTCTCCCACCACCACAGACACCACCACCAACAAGCCTCACGGTGGTGGCTTGTCTGAGAGAACTGGCTCCGGTGTGCCCAAATTCAAGTCCACACCACCACCTTCTCTTCCTCTCTCTCCCCCTCCCATTTCTCCTTCTTCTTACTTTGCTATTCCTCCTGGTCTCAGCCCTGCTGAGCTTCTTGACTCTCCGGTCCTCCTTAACTCCTCCAACATTCTGCCATCTCCAACAACTGGAGCATTTGTTGCTCAGAGCTACAATTGGAAGAGCAGTTCAGGGGGGAACCAGCAAATTGTCAAAGAAGAAGACAAAAGCTTCTCAAATTTCTCTTTCCAAACCCAACCAAGACCTCCTGCTTCATCCACAGCAACATATCAGTCTTCAAATGTCACAGTTCAAACACAACAGCCATGGAGTTTTCAGGAGGCAACAAAACAGGATAATTATCCTTCAGGCAAGAGTATGATGAAAGCTGCAAACTCTTCTTCCATGCAGAGTTTTTCCCCTGAGATTGCTAGTGTCCAAACTAACCATAGCAATGGTTTTCAATCGGATTATGGCAATTACCCCCAACAATCTCAGACCTTAAGCAGAAGGTCAGATGATGGTTACAATTGGAGGAAATATGGCCAAAAACAAGTGAAGGGAAGTGAGAATCCAAGAAGTTATTACAAATGCACATACCCCAATTGTCCTACAAAGAAGAAGGTTGAGAGGTCTTTGGATGGACAAATTACTGAGATTGTTTACAAGGGTACTCATAACCATCCTAAGCCTCAAAACACTAGGAGGAACTCATCAAATTCCTCTTCTCTTGCAATCCCTCATTCAAATCCCATCAGCACTGAAATCCCAGATCAATCCTATGTCACACATGGCAGTGGACAAATGGATTCAGCCGCCACCCCGGAAAACTCATCAATATCAATTGGAGATGATGATTTTGAGCAGAGTTCTCAAAAGTGTAAATCAGGAGGAGGAGATGAATATGATGAAGATGAACCTGAAGCCAAAAGATGGAAAATTGAAGGTGAAAATGAGGGTATGTCAGCCCCTGGAAGTAGAACCGTAAGAGAACCTAGAGTTGTAGTTCAGACAACCAGTGACATTGATATCCTGGATGATGGCTATAGATGGAGAAAATACGGGCAGAAAGTAGTGAAGGGCAATCCAAATCCAAGGAGTTACTACAAGTGTACACACCCAGGATGTCCCGTGAGGAAGCACGTGGAAAGAGCCTCACATGACCTAAGATCTGTGATCACAACCTATGAGGGAAAGCACAATCATGATGTTCCTGCAGCTCGTGGCAGTGGCAGCCATTCTGTTAACAGACCAATGCCAAACAATGCTGCAAACCACACCACTGCAGCCACTGCTATAAGGCCATTGCCAATGATTCACCACAATGACAATTCCCATCAGAGCCACCAAAGACAACAAGCACAACCAGAGGGGCAATCACCCTTCACCCTAGAGATGCTACAAAGTCCAGAAAGTTTTGGATTCTCAGGGTTTGGGAATCCAATGCAATCTTACATGAATCAGCAGCAACAGCAGCAACAGCAACTATCTGACAATGTTTTTTCCTCCAGAACCAAGGAGGAGCCTAGAGATGACATGTTCCTTGAGTCTTTACTATGCTGA 1758 0.4539 MASSSGSLDTSASANSFTNFTFPTHPFMTTSFADLLASPTTTDTTTNKPHGGGLSERTGSGVPKFKSTPPPSLPLSPPPISPSSYFAIPPGLSPAELLDSPVLLNSSNILPSPTTGAFVAQSYNWKSSSGGNQQIVKEEDKSFSNFSFQTQPRPPASSTATYQSSNVTVQTQQPWSFQEATKQDNYPSGKSMMKAANSSSMQSFSPEIASVQTNHSNGFQSDYGNYPQQSQTLSRRSDDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSLDGQITEIVYKGTHNHPKPQNTRRNSSNSSSLAIPHSNPISTEIPDQSYVTHGSGQMDSAATPENSSISIGDDDFEQSSQKCKSGGGDEYDEDEPEAKRWKIEGENEGMSAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRSVITTYEGKHNHDVPAARGSGSHSVNRPMPNNAANHTTAATAIRPLPMIHHNDNSHQSHQRQQAQPEGQSPFTLEMLQSPESFGFSGFGNPMQSYMNQQQQQQQQLSDNVFSSRTKEEPRDDMFLESLLC 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1905 585 MobiDBLite consensus disorder prediction 38 53 - -
Aed3g1905 585 ProSiteProfiles WRKY domain profile. 405 470 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aed3g1905 585 MobiDBLite consensus disorder prediction 179 241 - -
Aed3g1905 585 PANTHER WRKY TRANSCRIPTION FACTOR WRKY24-LIKE 46 558 - -
Aed3g1905 585 SUPERFAMILY WRKY DNA-binding domain 402 470 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aed3g1905 585 MobiDBLite consensus disorder prediction 288 392 - -
Aed3g1905 585 Pfam WRKY DNA -binding domain 238 294 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aed3g1905 585 Pfam WRKY DNA -binding domain 411 467 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aed3g1905 585 MobiDBLite consensus disorder prediction 535 567 - -
Aed3g1905 585 MobiDBLite consensus disorder prediction 292 361 - -
Aed3g1905 585 MobiDBLite consensus disorder prediction 179 237 - -
Aed3g1905 585 MobiDBLite consensus disorder prediction 362 382 - -
Aed3g1905 585 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 46 558 IPR044810 GO:0003700
Aed3g1905 585 Gene3D WRKY domain 397 463 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aed3g1905 585 Gene3D WRKY domain 224 297 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aed3g1905 585 SMART WRKY_cls 237 295 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aed3g1905 585 SMART WRKY_cls 410 469 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aed3g1905 585 MobiDBLite consensus disorder prediction 535 585 - -
Aed3g1905 585 ProSiteProfiles WRKY domain profile. 238 296 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aed3g1905 585 SUPERFAMILY WRKY DNA-binding domain 236 296 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aed3g1905 585 MobiDBLite consensus disorder prediction 146 165 - -
Aed3g1905 585 MobiDBLite consensus disorder prediction 504 523 - -
Aed3g1905 585 MobiDBLite consensus disorder prediction 38 84 - -
Aed3g1905 585 MobiDBLite consensus disorder prediction 67 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1905 Aed-Chr3 23344230 23348388 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1905 235 584 WRKY Transcription Factor Family AT2G38470 55.989 2.73e-113 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Aed3g1905 WRKY 2.1e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1905 K13424 - gmx:100127393 999.579
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g1905 3 23344230 23348388 Aed3g1905 3 23344230 23348388 ECH
Aed4g2196 4 24704065 24706929 Aed3g1905 3 23344230 23348388 PCT