Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1882 ATGGATGGTAATTCCTCATTACTACCTTGTGCTTCGTGCAAGTTGTTGAGACGCCGTTGTTCTCAGGATTGCATCTTTGTTCCTTATTTTCCTTCCAATGATCTTCGCAAGTTTGCCATTCTGCACAAGGTCTTTGGCTGCAGCAATGTCACCAAAATGCTCAAGGATGTTCCGGTTCAGCAAAGAGCAGATGCAGTGAGCAGTTTAGTTTATGAGGTAAATGCAAGAATTAGAAATCCTGTGTATGGTTGTGTTGGAATCATATCTTACCTAGAAAATCAAGTTTCTGAGTTGCAAACTCAGCTTGCAGTTGCTCAGGCAGAGATTCTTAGCAGGCAAATGTAG 345 0.4203 MDGNSSLLPCASCKLLRRRCSQDCIFVPYFPSNDLRKFAILHKVFGCSNVTKMLKDVPVQQRADAVSSLVYEVNARIRNPVYGCVGIISYLENQVSELQTQLAVAQAEILSRQM 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1882 114 ProSiteProfiles LOB domain profile. 8 109 IPR004883 -
Aed3g1882 114 Coils Coil 88 108 - -
Aed3g1882 114 PANTHER LOB DOMAIN-CONTAINING PROTEIN 12-LIKE 7 114 - -
Aed3g1882 114 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 7 114 - -
Aed3g1882 114 Pfam Lateral organ boundaries (LOB) domain 9 106 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1882 Aed-Chr3 23192113 23192734 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1882 3 114 AS2 family AT2G30130 73.214 1.01e-58 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Aed3g1882 LOB 1.1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1882 - - lang:109360574 181.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g2209 4 24792860 24793658 Aed3g1882 3 23192113 23192734 PCT