Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1879 ATGGAGAGTAATTCCTCATTACTACCTTGTGCTTCGTGCAAGTTGTTGAGACGCCGTTGTTCTCAGGACTGCATCTTTGTTCCGTATTGTCCTTCCAATGATCTTCGCAAGTTTGCCATTCTGCACAAGGTCTTTGGCTGCAGCAATGTCACCAAAATGCTCAAGGATGTTCCGGTTCAGCAAAGAGCAGATGCAGTGAGCAGTTTAGTTTATGAGGCAAATGCAAGAGTTAGAAACCCTGTGTATGGTTGTGTTGGAATCATATCTCACCTAGAAAGTCAAGTTTCTGAGTTGAAAATTCAGCTTGCAGTTGCCCAGGCAGAGATTCTTAGCATGCAAACTAATGTAGGAAGACTCTAG 360 0.4361 MESNSSLLPCASCKLLRRRCSQDCIFVPYCPSNDLRKFAILHKVFGCSNVTKMLKDVPVQQRADAVSSLVYEANARVRNPVYGCVGIISHLESQVSELKIQLAVAQAEILSMQTNVGRL 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1879 119 Coils Coil 88 119 - -
Aed3g1879 119 Pfam Lateral organ boundaries (LOB) domain 9 106 IPR004883 -
Aed3g1879 119 PANTHER LOB DOMAIN-CONTAINING PROTEIN 12-LIKE 7 114 - -
Aed3g1879 119 ProSiteProfiles LOB domain profile. 8 109 IPR004883 -
Aed3g1879 119 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 7 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1879 Aed-Chr3 23177016 23177684 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1879 9 113 AS2 family AT2G30130 74.286 6.07e-56 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Aed3g1879 LOB 1.5e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1879 - - var:108336689 175.252