Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1873 ATGGCCGCAGCCTTAGAGTGCTGGTCGAGTCGCGCCACCGCCGCCGCCACCGACGACGACACGGTGGAGCAGGTCCTGATGCGCAGCCAGCACAGATCCGAGGGAAGTGGCGCCGGCGGTTCCAACAACAACAACAACAACAAAGATCCCGTCCACAAGAAGCTCCAGAAGCTGACTCGCAACGTCTCCGAAGCCATCGCTTCGTTCAGAAACTCACTCAACCTCGATTCCCCGCCTTCTTCCAAAGCCGACGCTTCTTCCCGGAAGCTCGCCTGGGGAAGCGTTGTTCGCAACCTCACTCAGCTCTACCCCGGCAGCCAGCTCCCCGAGAAACTCATGTCCAACATTCGCAAGCATTACGATTCCTTGCCCCTCAGTTATGCACAGGCGGAGTTTGATATGAAGGATGTGTTTCTTCACATAAAGTTGATGGAGCAAGCTTCGGAGAGTGACCAGCCTTCGATTTTGATTCAAGAGGAGTGTGATGATGATGAGGTTCAGGGTTCTGCTTTGAGGCTCACGTTCGCTTGCAACTCTCCGATTTCATGGCCTGCGATGTCGGGTGCGTTGGATAGTTCCTCCATTTGCTGCAAGAGGATGCAGATCTTTGAGAAGAAAGGTTTCACCTTGGGGGTTGTGCTTCTCGTGGTTCAATCTGGGCATGACAAGTTGGTGAGGGCCAGGGTTGAGAATGCTTTGAAGTTTGCCATGAAGAAGCCCAAAACCGGTGCTGTGAAGCTTCCCTTTGGGCTCTGTGGGTGCCAGGAGGAGAATTCTAAAGGGAGAGAGCTTGTGGAGATTGAAGAAGAAGCCAGTGATGGTTACCGCGGAAAGGAGTTTGAGAATTCAAGCCAAAGGATTCAGCTTCAGGTGCCTTTGCCTTATTCATCTTTTGTTGTGTCAGTGGATGAATGGCAGACCATAAAGTCAGGTGGTGATGAGATTGAGAAATGGTTGTTGAACTCAGATAGTGTTGAGTTTGTTGAGCAGATTGGGCCGAATTCGTATAAAGGAGTGTATATGGGGAAGAGGGTCGGGATTGAGAAGCTGAAGGGGTGTGATAAAGGGAATTCTTATGAGTTTGAACTCCACAAGGATCTTCTGGAACTCATGACTTGTGGCCATAGAAACATTCTGCAGTTTTGTGGTATTTGTGTGGATGATAATCATGGGTTGTGTGTGGTGACCAAGTTCATGGAAGGTGGATCTGTTCATGACTTGATGATGAAGAACAAGAAGCTTCAGTCTAAGGATATTGTGAGGATTTCTGTTGATGTGGCTGAAGGGATCAAGTTTATGAATGACCATGGTGTTGCATATAGAGACCTTAATTCACAGAGGATTCTGTTGGATAGGCATGGAAATGCTTGCTTGGGAGATATGGGTTTAGTCACTGCCTGCAAGAGTGTTGGAGAAGCAATGGAGTATGAAACTGATGGTTATAGGTGGCTAGCTCCAGAGATAATTGCAGGGGACCCAGAGAATGTGACAGAGACATGGATGAGTAACGTTTATAGTTTTGGGATGGTAATATGGGAGATGGTAACTGGTGAGGCAGCTTATTCTTCATTTTCACCTGTGCAAGCAGCAGTTGGCATTGCTGCATGTGGCCTTAGACCTGAAATCCCAAAAGACTGCCAACAAACTCTAAAACACATTATGACAAAGTGCTGGAACAACACCCCTTCAAAACGCCCTCAATTCTCTGAAATTTTAGCCATATTGCTGCGACCAAACAACAACAATAGATAA 1752 0.48 MAAALECWSSRATAAATDDDTVEQVLMRSQHRSEGSGAGGSNNNNNNKDPVHKKLQKLTRNVSEAIASFRNSLNLDSPPSSKADASSRKLAWGSVVRNLTQLYPGSQLPEKLMSNIRKHYDSLPLSYAQAEFDMKDVFLHIKLMEQASESDQPSILIQEECDDDEVQGSALRLTFACNSPISWPAMSGALDSSSICCKRMQIFEKKGFTLGVVLLVVQSGHDKLVRARVENALKFAMKKPKTGAVKLPFGLCGCQEENSKGRELVEIEEEASDGYRGKEFENSSQRIQLQVPLPYSSFVVSVDEWQTIKSGGDEIEKWLLNSDSVEFVEQIGPNSYKGVYMGKRVGIEKLKGCDKGNSYEFELHKDLLELMTCGHRNILQFCGICVDDNHGLCVVTKFMEGGSVHDLMMKNKKLQSKDIVRISVDVAEGIKFMNDHGVAYRDLNSQRILLDRHGNACLGDMGLVTACKSVGEAMEYETDGYRWLAPEIIAGDPENVTETWMSNVYSFGMVIWEMVTGEAAYSSFSPVQAAVGIAACGLRPEIPKDCQQTLKHIMTKCWNNTPSKRPQFSEILAILLRPNNNNR 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1873 583 Gene3D Transferase(Phosphotransferase) domain 1 318 579 - -
Aed3g1873 583 SUPERFAMILY Protein kinase-like (PK-like) 306 575 IPR011009 -
Aed3g1873 583 PANTHER SERINE-THREONINE PROTEIN KINASE 1 579 - -
Aed3g1873 583 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 579 - -
Aed3g1873 583 MobiDBLite consensus disorder prediction 28 51 - -
Aed3g1873 583 MobiDBLite consensus disorder prediction 28 49 - -
Aed3g1873 583 Pfam Protein tyrosine and serine/threonine kinase 360 574 IPR001245 GO:0004672|GO:0006468
Aed3g1873 583 ProSiteProfiles Protein kinase domain profile. 325 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed3g1873 583 PRINTS Tyrosine kinase catalytic domain signature 502 524 IPR001245 GO:0004672|GO:0006468
Aed3g1873 583 PRINTS Tyrosine kinase catalytic domain signature 396 409 IPR001245 GO:0004672|GO:0006468
Aed3g1873 583 PRINTS Tyrosine kinase catalytic domain signature 546 568 IPR001245 GO:0004672|GO:0006468
Aed3g1873 583 PRINTS Tyrosine kinase catalytic domain signature 432 450 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1873 Aed-Chr3 23126857 23132243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1873 308 575 MAP Kinase Kinase Kinase AT2G17700 32.727 3.17e-51 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-7 Aed3g1873 PK_Tyr_Ser-Thr 1.3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1873 - - gmx:100798384 1078.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g1873 3 23126857 23132243 Aed3g1873 3 23126857 23132243 ECH
Aed4g2216 4 24845455 24849557 Aed3g1873 3 23126857 23132243 PCT