Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1872 ATGACTGGAGAGGCAGTGAACCCTAAAGCCTACCCTTTGGCCGATGCGCAACTCTCCATAACAATACTGGATCTTGTGCAACAAGCTGCCAACTACAAGCAACTCAAAAAGGGTGCTAATGAAGCGACCAAGACACTCAATAGAGGAATTTCTGAGTTCGTTGTCATGGCCGCAGACACTGAGCCTCTTGAGATTCTTCTCCATCTTCCTCTCCTTGCTGAGGATAAGAATGTTCCCTATGTATTTGTCCCATCAAAACAAGCACTTGGGCGAGCATGTGGAGTGACACGGCCAGTGATTGCATGTTCTGTAACAACTAATGAAGGAAGTCAACTGAAATCTCAAATTCAGCAACTAAAGGATGCTATTGAGAAGCTGTTAATTTGA 387 0.447 MTGEAVNPKAYPLADAQLSITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKDAIEKLLI 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1872 128 SUPERFAMILY L30e-like 6 126 IPR029064 -
Aed3g1872 128 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 23 111 IPR004038 -
Aed3g1872 128 PRINTS Ribosomal protein L7A/RS6 family signature 35 49 IPR018492 -
Aed3g1872 128 PRINTS Ribosomal protein L7A/RS6 family signature 54 67 IPR018492 -
Aed3g1872 128 PRINTS Ribosomal protein L7A/RS6 family signature 70 80 IPR018492 -
Aed3g1872 128 PRINTS Ribosomal protein L7A/RS6 family signature 80 94 IPR018492 -
Aed3g1872 128 PANTHER NHP2-LIKE PROTEIN 1 4 128 - -
Aed3g1872 128 PRINTS High mobility group-like nuclear protein signature 8 21 IPR002415 GO:0003723|GO:0005730
Aed3g1872 128 PRINTS High mobility group-like nuclear protein signature 21 36 IPR002415 GO:0003723|GO:0005730
Aed3g1872 128 PRINTS High mobility group-like nuclear protein signature 38 48 IPR002415 GO:0003723|GO:0005730
Aed3g1872 128 PRINTS High mobility group-like nuclear protein signature 82 94 IPR002415 GO:0003723|GO:0005730
Aed3g1872 128 Gene3D - 1 128 IPR029064 -
Aed3g1872 128 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 4 128 - -
Aed3g1872 128 Coils Coil 109 128 - -
Aed3g1872 128 ProSitePatterns Ribosomal protein L7Ae signature. 73 90 IPR004037 GO:0042254|GO:1990904
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1872 Aed-Chr3 23124035 23125872 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1872 35 124 Cytoplasmic Ribosomal Protein Gene Family AT2G47610 28.889 3.66e-06 42.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1872 K12845 - gmx:100817627 238.81