Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1861 ATGCCGAGTCAAACCGAGTCACCCAGCAACTCATTGAGTCAACTCGCTCAGAACATGTTCTCCGACAACAACAGCAACATCATGCTCGCAGCAATTGTTTCCTTGCTCATAGTAATCCTCTTCGTCCTCCTACTCCACGTGTACGCCAAATGGTTCTTATTTCAGGAACAATCACATTCCCAGACTCGCCGCCTCCGGCAAACTCCGGTGACCGTTTCCGGCGTTCTGGAACCTTCCCATTTCCATAGCATCAACATAGAATCCTCACCAACGTGCACCAAAGGCCTTGACTCGGCGACAGTTTCGGCAATACCCATGTTTGTGCAAGGAACAACGAAAACAGAGAAAACAGAGGAGTTGGAATGTGTGATTTGCTTGAGCGTTATTGAAGAGGGTGAGATTGGAAGGAGCTTGCCGAAGTGTGGCCACGCTTTTCACATGGATTGCATTGACATGTGGTTGAGTTCACATTGCAATTGTCCAATTTGTAGAGCTCCTATTGTGGTAAGTGGAGATTCTCAACTGGATTCTGTTGAGATTGTGGTTGTTACTCCGGGTTATGAGATTAGTGAGAGCGAGCGTGGTGGAGTGAGTGATTCTGTTCCAGAAACTTCTTCATCTTTGTTGGGTTTCTCTTTGAAGAGATTGCTGAGTAAGGTTTTTCTGTCACCTGATCATGTAACTGAATTGGATGCTTCACAATGA 705 0.4624 MPSQTESPSNSLSQLAQNMFSDNNSNIMLAAIVSLLIVILFVLLLHVYAKWFLFQEQSHSQTRRLRQTPVTVSGVLEPSHFHSINIESSPTCTKGLDSATVSAIPMFVQGTTKTEKTEELECVICLSVIEEGEIGRSLPKCGHAFHMDCIDMWLSSHCNCPICRAPIVVSGDSQLDSVEIVVVTPGYEISESERGGVSDSVPETSSSLLGFSLKRLLSKVFLSPDHVTELDASQ 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1861 234 SMART ring_2 122 163 IPR001841 -
Aed3g1861 234 CDD RING-H2_EL5_like 121 164 - -
Aed3g1861 234 SUPERFAMILY RING/U-box 113 170 - -
Aed3g1861 234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 168 IPR013083 -
Aed3g1861 234 ProSiteProfiles Zinc finger RING-type profile. 122 164 IPR001841 -
Aed3g1861 234 Pfam Ring finger domain 121 164 IPR001841 -
Aed3g1861 234 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 1 229 IPR044675 -
Aed3g1861 234 PANTHER - 1 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1861 Aed-Chr3 23029695 23030399 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1861 26 165 Rapid Response to Elicitors AT3G16720 40.426 1.16e-27 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1861 - - gmx:100777829 382.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g1861 3 23029695 23030399 Aed3g1861 3 23029695 23030399 ECH
Aed4g2237 4 25013138 25014010 Aed3g1861 3 23029695 23030399 PCT