Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1856 ATGGCTGCAAACGCCCCCATCACCATGAAAGAGACCTTAACGCTGGGAAGCGTTGGAGTCAACCCGCAATTCATTACATTTACTCATGTGACAATGGAATCGGATAAGTACATTTGTGTCAGGGAAACTGGAGCTCAGCACAGTGTTGTCATCATTGACATGAGCATGCCAATGCAGCCTTTGAGACGGCCCATAACCGCTGATTCTGCATTGATGAATCCAAATTCTAGAATTCTTGCGCTCAAAGCCCAAGTTCCCGGCACCACTCAGGATCATTTGCAAGTTTTCAACATTGAAACGAAAGCAAAGATGAAATCACATCAGATGAAAGAACAGGTTGTCTTTTGGAAGTGGATAACTCCAAATTCACTGGGAATTGTCACTCAGACGTCTGTATATCATTGGTTAGTTGAAGCCGAGGGTGAGCCAATGAAGATGTTTGACCGAACAGCAAATCTGGCTAATAACCAAATTATCAATTATCGTTGTGATCCTAATGAAAAGTGGTTGGTTTTGATTGGAATTGCTCCTGGTTCAGCAGAGAGACCACAACTAGTAAAAGGAAACATGCAACTCTTCTCTGTGGATCAGCAACGTAGTCAGGCTCTTGAAGCACATGCTGCCTCATTTGCTTCGTTTAGAGTGACTGGGAATGATAAGGATTCTACTCTTATTTGTTTTGCATCAAAGAGTATGAATGCTGGACAGGTTACATCAAAGATGCATGTCATTGAACTTGGTGCCCAGCCAGGCAAACCATCATTTACTAAGAAACAAGCAGATCTGTTCTTCCCTCCAGACTTTGCTGATGACTTTCCTGTGTCAATGCAGATTTCAAACAAATATGGATTGATTTATGTTATCACAAAGCTTGGGTTGTTATTTGTCTATGATCTGGAGACTTCAACCGCAGTTTATAGAAACCGAATCAGTCCCGATCCTATATTTTTGACCACAGAAGCACCTTCAGTAGGGGGGTTTTATGCCATCAATAGACGTGGCCAGGTGTTGCTTGCTACTATAAATGAGGCAGCCATTGTACCTTTTGTTAGTGGCCAGCTAAATAATTTGGAACTTGCTGTTAGCTTGGCTAAGAGAGGAAACCTCCCCGGTGCAGAAGAATTGGTTGTCAAGCGGTTTCAAGAATTATTTGCTCAGACCAAGTATAAGGAAGCTGCAGAGCTCGCTGCAGAATCTCCACAAGGAATTCTTCGAACTCCTGACACTGTTGCTAAATTTCAGAGTGTACCTGTGCAAGCTGGGCAAACGCCACCACTGTTACAGTACTTTGGTACTCTGTTAACTAGGGGAAAACTCAATTCTTATGAGTCATTGGAATTGTCACGGCTCGTGGTGAATCAAAACAAAAAGAATCTTTTGGAAAATTGGCTAGCAGAGGACAAACTTGAATGCAGCGAGGAGCTTGGGGACCTTGTGAAGGTTGGATACACACCTGATTACATGTTCCTTCTGCAAACAATATTACGGGCAGATGCTCAGGGTGCTGTAAATTTTGCTCTGATGATGTCTCAAATGGAGGGGGGTTGCCCTGTTGACTACAACACAATAACTGATCTCTTTCTTCAGGAATTTAATCCGCGAGGCAACTGCCTTTTTATTGGATGTGCTGAAGCCAAACCTACTAGAACATGGATATCTTCAAACAAAGTCATTATGACCGTCCACGGATTGCTCAGCTTTGTGAGAAGGCTGGCCTTTTCATACGGGCTCTTCAGTGAGGATCCTGATATTCACTTCAAGTATATTGAAGCAGCTGCTAAAACTGGACAAATTAAGGAGGTGGAGCGTGTTACCCGGGAATCAAACTTTTATGATGCTGAGAAGACCAAGAACTTTTTAATGGAGACCAAGCTTCCAGATGCACGACCATTGATAAACGTGTGTGATCGTTTTGGTTTTGTTCCAGATCTCACCCATTATCTCTACACCAGCAACATGCTTCGTTATATTGAGGGATATGTTCAAAAGGTGAATCCAGGAAATGCTCCTCTAGTTGTTGGACAGTTGTTAGATGATGAATGCCCTGAAGATTTCATTAAAGGTCTTATACTTTCAGTTCGTTCTCTTCTTCCAGTTGAGCCTTTAGTTGAAGAATGTGAGAAGAGAAATCGTCTCCGCTTGCTTACTCAGTTTTTGGAGCATCTTGTGAGTGAGGGAAGCCAGGATGTGCATGTGCATAATGCTCTGGATTCCTCAAGAGTCATGGATTACATTAATAGGCTGGACAACTTTGATGGCCCAGCTGTTGGGGAGGTGGCAGTAGAAGCAAACCTATATGAAGAAGCTTTTGCCATTTTCAAAAAATTTAATTTGAATGTTCAGGCTGTTAATGTCCTATTAGATAACCTTCAGACCATTGATCGAGCTGTGGAGTTTGCATTCCGGGTTGAAGAAGATGCTGTATGGAGCCAAGTGGCTAAGGCACAACTACGAGAAGGCTTAGTAAGTGATGCAATTGAGTCATTTATCCGTGCAGATGATTCTACTCACTTCTTAGAGGTTATAAAAGCTTCTGAAGATGGAGAAGTATACCATGACCTAGTAAGGTACCTTCTCATGGTTAGGCAGAATACCAAAGAGCCCAAGGTGGACAGTGAGCTCATATATGCATATGCAAAGATTGACCGACTTGGTGAAATTGAAGAGTTTATATTGATGCCAAATGTTGCTAATTTACCAAATGTTGGAGACCGTTTGTATGATGAGGCTCTCTATGAGGCTGCAAAAATTATATTTGCTTTTATTTCAAACTGGGCTAAGTTAGCAGTGACATTGGTGAAGCTTCAACAATTCCAAGGTGCTGTTGATGCTGCTAGGAAAGCAAACAGTTCAAAAACATGGAAGGAAGTTTGTTTCGCCTGTGTTGATGCTGAGGAATTCCGGTTGGCTCAGATTTGTGGTCTCAATGTCATCATTCAGGTGGATGATTTGGAAGAGGTTAGTGAGTTTTATCAGAACAGAGGATGCTTTAATGAACTCATATCCCTGATGGAAAGTGGACTCGGACTGGAGCGTGCCCATATGGGTATCTTTACTGAGTTGGGAGTTCTTTATGCAAGATATCGTCCTGAGAAATTAATGGAGCACATTAAGTTGTTCTCAACTCGGCTTAACATTCCCAAGCTTATTCGAGCCTGTGATGAGCAGCAGCATTGGATGGAACTTACATACTTATACATCCAATATGATGAGTTTGATAATGCTGCAACTACTGTAATGAATCACTCTCCTGAAGCATGGGACCACATGCAATTCAAAGATATTATAGTTAAAGTTGCAAGTGTGGAGCTCTACTATAAGGCTGTTCACTTCTACTTGCAAGAGCATCCTGATAATATAAATGATCTTCTTAATGTACTTGCCCTTCGTGTGGACCACACCCGTGTTGTGGATATAATGCGGAAGGCAGGCCACATCCGATTGGTTAAGCCATACTTGACTGCAGTTCAAAGCAATAATGTGTCTGCTGTTAATGAAGCTTTGAATGAAATTTATGTTGAGGAAGAGGACTATGATAGACTTCATGAATCAATAGATCTGCATGACAACTTCGATCAGATAGGTCTTGCACAGAAGATTGAGAAGCATGAGCTTCTTGAGATGAGGCGTGTTGCTGCTTATATTTATAAGAAAGCTGGAAGATGGAAGCAGTCCATTGCTTTGTCAAAAAAAGACAGTCTTTACAAGGACTGTATGGAAACTTGCTCTCAATCTGGTGACCGTGAACTCTCAGAGGATTTACTTGTTTACTTTATTGATCAGGGGAAGAAAGAGTGTTTTGCATCTTGCCTCTTTGTCTGCTATGACATAATCCGGCCAGATGTTGTTCTTGAGCTAGCTTGGATGAACAGCATGATTGATTTTGCTTTCCCATACCTCTTACAGTTTATTCGAGAGTATACTGGTAAAGTTGATGAGCTTATCAAGGAGAAAATTGAAGCACAAAAAGAGGAGAAAGCTAAAGAGAAGGAAGAGAAGGATGTTCTTGCTCAACAGAATATGTATGCCCAGTTACTACCACTTGCTTTGCCTGCACCACCAATGCCAGGTATGGGTGGAGGAGGGTATGGTCCGCCGACAACACCCCCTATGGGTGGAGGAGGGTATGGTCCACCGACAACACCTCCTATGGGTGGTTTGGGGATGCCACCGATGCCCCCTTTTGGCATGCCTCCAATGGGCAGCGGCAGCAGCTCCTACTGA 4224 0.4259 MAANAPITMKETLTLGSVGVNPQFITFTHVTMESDKYICVRETGAQHSVVIIDMSMPMQPLRRPITADSALMNPNSRILALKAQVPGTTQDHLQVFNIETKAKMKSHQMKEQVVFWKWITPNSLGIVTQTSVYHWLVEAEGEPMKMFDRTANLANNQIINYRCDPNEKWLVLIGIAPGSAERPQLVKGNMQLFSVDQQRSQALEAHAASFASFRVTGNDKDSTLICFASKSMNAGQVTSKMHVIELGAQPGKPSFTKKQADLFFPPDFADDFPVSMQISNKYGLIYVITKLGLLFVYDLETSTAVYRNRISPDPIFLTTEAPSVGGFYAINRRGQVLLATINEAAIVPFVSGQLNNLELAVSLAKRGNLPGAEELVVKRFQELFAQTKYKEAAELAAESPQGILRTPDTVAKFQSVPVQAGQTPPLLQYFGTLLTRGKLNSYESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKVGYTPDYMFLLQTILRADAQGAVNFALMMSQMEGGCPVDYNTITDLFLQEFNPRGNCLFIGCAEAKPTRTWISSNKVIMTVHGLLSFVRRLAFSYGLFSEDPDIHFKYIEAAAKTGQIKEVERVTRESNFYDAEKTKNFLMETKLPDARPLINVCDRFGFVPDLTHYLYTSNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVEECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALDSSRVMDYINRLDNFDGPAVGEVAVEANLYEEAFAIFKKFNLNVQAVNVLLDNLQTIDRAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRADDSTHFLEVIKASEDGEVYHDLVRYLLMVRQNTKEPKVDSELIYAYAKIDRLGEIEEFILMPNVANLPNVGDRLYDEALYEAAKIIFAFISNWAKLAVTLVKLQQFQGAVDAARKANSSKTWKEVCFACVDAEEFRLAQICGLNVIIQVDDLEEVSEFYQNRGCFNELISLMESGLGLERAHMGIFTELGVLYARYRPEKLMEHIKLFSTRLNIPKLIRACDEQQHWMELTYLYIQYDEFDNAATTVMNHSPEAWDHMQFKDIIVKVASVELYYKAVHFYLQEHPDNINDLLNVLALRVDHTRVVDIMRKAGHIRLVKPYLTAVQSNNVSAVNEALNEIYVEEEDYDRLHESIDLHDNFDQIGLAQKIEKHELLEMRRVAAYIYKKAGRWKQSIALSKKDSLYKDCMETCSQSGDRELSEDLLVYFIDQGKKECFASCLFVCYDIIRPDVVLELAWMNSMIDFAFPYLLQFIREYTGKVDELIKEKIEAQKEEKAKEKEEKDVLAQQNMYAQLLPLALPAPPMPGMGGGGYGPPTTPPMGGGGYGPPTTPPMGGLGMPPMPPFGMPPMGSGSSSY 1407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1856 1407 SUPERFAMILY ARM repeat 883 1218 IPR016024 -
Aed3g1856 1407 Coils Coil 1304 1339 - -
Aed3g1856 1407 Gene3D - 1 376 IPR016025 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Aed3g1856 1407 PANTHER CLATHRIN HEAVY CHAIN 1 480 - -
Aed3g1856 1407 PANTHER CLATHRIN HEAVY CHAIN 480 530 - -
Aed3g1856 1407 Gene3D - 1229 1325 - -
Aed3g1856 1407 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 829 970 IPR000547 GO:0006886|GO:0016192
Aed3g1856 1407 SMART CLH_2 690 825 IPR000547 GO:0006886|GO:0016192
Aed3g1856 1407 SMART CLH_2 545 685 IPR000547 GO:0006886|GO:0016192
Aed3g1856 1407 SMART CLH_2 1124 1283 IPR000547 GO:0006886|GO:0016192
Aed3g1856 1407 SMART CLH_2 829 970 IPR000547 GO:0006886|GO:0016192
Aed3g1856 1407 SMART CLH_2 975 1121 IPR000547 GO:0006886|GO:0016192
Aed3g1856 1407 PIRSF CHC 479 534 IPR016341 GO:0016192|GO:0032051|GO:0071439
Aed3g1856 1407 PIRSF CHC 736 1363 IPR016341 GO:0016192|GO:0032051|GO:0071439
Aed3g1856 1407 PIRSF CHC 554 738 IPR016341 GO:0016192|GO:0032051|GO:0071439
Aed3g1856 1407 PIRSF CHC 2 481 IPR016341 GO:0016192|GO:0032051|GO:0071439
Aed3g1856 1407 SUPERFAMILY Clathrin heavy-chain terminal domain 4 342 IPR016025 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Aed3g1856 1407 Gene3D Tetratricopeptide repeat domain 738 883 IPR011990 GO:0005515
Aed3g1856 1407 Gene3D Tetratricopeptide repeat domain 884 1223 IPR011990 GO:0005515
Aed3g1856 1407 PANTHER CLATHRIN HEAVY CHAIN RELATED 737 1383 - -
Aed3g1856 1407 PANTHER CLATHRIN HEAVY CHAIN RELATED 575 736 - -
Aed3g1856 1407 MobiDBLite consensus disorder prediction 1371 1398 - -
Aed3g1856 1407 Pfam Clathrin-H-link 368 433 - -
Aed3g1856 1407 MobiDBLite consensus disorder prediction 1359 1407 - -
Aed3g1856 1407 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 690 825 IPR000547 GO:0006886|GO:0016192
Aed3g1856 1407 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 975 1121 IPR000547 GO:0006886|GO:0016192
Aed3g1856 1407 Pfam Region in Clathrin and VPS 977 1119 IPR000547 GO:0006886|GO:0016192
Aed3g1856 1407 Pfam Region in Clathrin and VPS 580 683 IPR000547 GO:0006886|GO:0016192
Aed3g1856 1407 Pfam Region in Clathrin and VPS 693 818 IPR000547 GO:0006886|GO:0016192
Aed3g1856 1407 Pfam Region in Clathrin and VPS 1127 1266 IPR000547 GO:0006886|GO:0016192
Aed3g1856 1407 Pfam Region in Clathrin and VPS 832 968 IPR000547 GO:0006886|GO:0016192
Aed3g1856 1407 SUPERFAMILY ARM repeat 579 636 IPR016024 -
Aed3g1856 1407 PANTHER CLATHRIN HEAVY CHAIN RELATED 1 480 - -
Aed3g1856 1407 PANTHER CLATHRIN HEAVY CHAIN RELATED 480 530 - -
Aed3g1856 1407 SUPERFAMILY ARM repeat 738 882 IPR016024 -
Aed3g1856 1407 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1124 1267 IPR000547 GO:0006886|GO:0016192
Aed3g1856 1407 PANTHER CLATHRIN HEAVY CHAIN 737 1383 - -
Aed3g1856 1407 PANTHER CLATHRIN HEAVY CHAIN 575 736 - -
Aed3g1856 1407 SUPERFAMILY ARM repeat 345 480 IPR016024 -
Aed3g1856 1407 Pfam Clathrin propeller repeat 153 196 IPR022365 -
Aed3g1856 1407 Pfam Clathrin, heavy-chain linker 343 366 IPR015348 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Aed3g1856 1407 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 511 685 IPR000547 GO:0006886|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1856 Aed-Chr3 22989665 23002995 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1856 K04646 - gmx:100808189 1160.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g1856 3 22989665 23002995 Aed3g1856 3 22989665 23002995 ECH
Aed3g1856 3 22989665 23002995 Aed4g2241 4 25045370 25048343 ECH