Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1854 ATGTCTTGCTCCGTCGCGGTTTCCAACTCACCGGTGTTCTCTCCTTCTTCTTCCCTCTTCTGCTCAAAGCCCTCCATCATCTCTTCTTCGCCGGAATCTCTATCCCTCTCTTTGTCTCATCTCAAACCTGCGAACTCTTCTACGACGTCGTCTTCATGTTCTTCTCCCTCTGCTGCCGCTGCTTCTTCCTCTCCTTCTTCTCCGTTTCGGCTTCGCCTTCCCAAGCCTCCCACCGCGTTCTCTGCGTCTTCTTCTGCTGCGTCGACATCTCCGAACGGCGCCGTTTTGAAGAGGAAGCGACCCGCTAGGTTGGACATACCCGTTTCCTCTCTCGCCTTTGCAGTTCCTCCCACGCCCTCCGCGGCGGCGCGTGACGTGGTCGAGGCTGATGAAGATGGCTTTGGTGTGTACTGCAAGAGAGGGAGGAGGGAGTACATGGAGGATCGTTACACTGCTGGGGATAATCTTCGCGGAGAACACAAACTGGCTTTTTTTGGCATATTTGATGGGCACGGTGGTGCAAAGGCTGCTGAATTTGCTGCAAACAACTTAGAAAAGAATGTCTTAGATGAAGTGATTGTGAGAGACGACGAAGATATTGAGGAGGCAGTGAAGCGTGGGTACCTAAACACTGATTCGGATTTTCTAAAGGAGGATTTCCACGGCGGCTCTTGCTGTGTGACAGCATTGATTAGGAATGGCAACCTTGTCGTGTCCAACGCCGGCGATTGCCGTGCTGTCATTAGCAGAGGTGGTGTTGCTGAGGCCCTCACATCTGATCACAGACCCTCAAGGGAAGACGAAAGGGACAGAATTGAGAGCCTGGGTGGCTATGTCGATTTATGCCGCGGTGTTTGGAGGATCCAGGGATCTCTAGCTGTGTCTAGAGGAATTGGAGATAGACACCTGAAACAATGGGTGACAGCAGAACCTGAGACCAAAGTCCTCAGAATTGAACCTGAACATGACTTTTTAATCTTAGCTTCAGATGGATTATGGGATAAGGTTAGTAACCAGGAAGCAGTAGATATTGCTCGCTCTTTTCTCGTGGGGAGCACCAACAAATCACAATCATCTATGGCTTGTAAAAAGCTTGTGGATTTGTCTGTTTCACGAGGCTCTTTGGATGATACAAGTGTTTTGCTAATCAAACTGGAGCACTATATTTGA 1170 0.4991 MSCSVAVSNSPVFSPSSSLFCSKPSIISSSPESLSLSLSHLKPANSSTTSSSCSSPSAAAASSSPSSPFRLRLPKPPTAFSASSSAASTSPNGAVLKRKRPARLDIPVSSLAFAVPPTPSAAARDVVEADEDGFGVYCKRGRREYMEDRYTAGDNLRGEHKLAFFGIFDGHGGAKAAEFAANNLEKNVLDEVIVRDDEDIEEAVKRGYLNTDSDFLKEDFHGGSCCVTALIRNGNLVVSNAGDCRAVISRGGVAEALTSDHRPSREDERDRIESLGGYVDLCRGVWRIQGSLAVSRGIGDRHLKQWVTAEPETKVLRIEPEHDFLILASDGLWDKVSNQEAVDIARSFLVGSTNKSQSSMACKKLVDLSVSRGSLDDTSVLLIKLEHYI 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1854 389 ProSitePatterns PPM-type phosphatase domain signature. 164 172 IPR000222 GO:0043169
Aed3g1854 389 PANTHER PROTEIN PHOSPHATASE 2C 3 388 IPR015655 GO:0004722|GO:0006470
Aed3g1854 389 Gene3D - 124 388 IPR036457 -
Aed3g1854 389 CDD PP2Cc 133 385 IPR001932 -
Aed3g1854 389 SUPERFAMILY PP2C-like 134 386 IPR036457 -
Aed3g1854 389 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN-RELATED 3 388 - -
Aed3g1854 389 MobiDBLite consensus disorder prediction 38 69 - -
Aed3g1854 389 MobiDBLite consensus disorder prediction 38 98 - -
Aed3g1854 389 ProSiteProfiles PPM-type phosphatase domain profile. 133 385 IPR001932 -
Aed3g1854 389 SMART PP2C_SIG_2 131 385 IPR001932 -
Aed3g1854 389 Pfam Protein phosphatase 2C 134 377 IPR001932 -
Aed3g1854 389 MobiDBLite consensus disorder prediction 78 92 - -
Aed3g1854 389 SMART PP2C_4 127 383 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1854 Aed-Chr3 22964916 22967022 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1854 1 389 PP2C-type Phosphatase Gene Family AT2G30020 64.109 6.86e-169 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1854 K17506 - gmx:100797934 590.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g1854 3 22964916 22967022 Aed3g1854 3 22964916 22967022 ECH
Aed3g1854 3 22964916 22967022 Aed4g2242 4 25053969 25055986 ECH
Aed4g2242 4 25053969 25055986 Aed3g1854 3 22964916 22967022 PCT