Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1850 ATGTCTCTGAATCACTCTCCAATGGATTTTGATGGTGAGAACTCTAGTGGGTGCAGTACGCGTAAAAAAGGGTCGAGGAAAAGAAAGCTTCTTGTCAACGAGAGAGTTGAGGTGAAGAGTGTGGAAGAGGGATTTCAGGGTTCATGGCACCCGGGGAAGGTGGTCCGTTGTGAGAGGCAGAAGCGTCATGTCAAATATGACAACATTCTAGATGATGGTGAATCAAAGTATCTCGTTGATGTGGTGCGTGTTTCAGCTGTTTTGGATGGTACTGCTTCTACTTCAGATGGTAGGATTGAACGTGGATTCCTTAGACCAGTGCCTCCTCCGGTGGCTTTTGGGGAGAATGACCTTCCATTTGGTCTCTGTGTTGATGTGTATTATGCAGAAGCCTGGTGGGAAGGCATTATGTTTGACCACTCCAATGGAAAGGAGGTGAGGAGTGTGCTCTTCCCGGATTTGGGTGATGAAATTAGGGTTGGAATTCATCAGTTGAGGATAACTCAGGATTGGGATGAAGCTACTGAGAATTGGGAGCCGCGAGGGAAGTGGACGTTCATTGAAGTGGTTGAGGAGTGTGAGAAGGAATCCGTTGTTGCAGTTTCACTGAAGCAAATATGGTATGATGTAAGGGCAACAACGGAGTTTGACGACAATATAAAGCACTGGACTTGTAATGTGAAGGAGTTGTGGAGAAACCCTGTATATGAGGTGATTGGTGACTACTATGTTCTCACACTGCAACAAGTTTTCCCAGCCTTAAACCTTCCGAAGGATTTCCTGAAAGTAACACCAGAACTGAAGTCAGTTGAACTTACTGACAACATTCATTGTGATGCTGGACAAAGTGATGTATTTGGTTCTGACATTGATGATAGCCCTATGGAAGATGGTGATGCGCCAAACTTGTTTGATAGCAACAAAAAATGTGGTGGCATCACTCCCCTTCAAGAGGAATATGATAAAGATCCTTCGGTGGATGAGGCATCTGAAAAGGAAATTATTTTGCAGGAAGAACCTGCATCTCCAGTTCAAGAGATCATGCCTGAGACTGGTGGTGAAGAAATGCCAGGTGCTAGCGGTTGCGGAAAGAAGAGAAAGCGTAGATGCTCGGAATCCATCTATTGGAAACCGCTGGTACTGAACAAGGTTGAACTCTGTCCTGATGTCATAAACGAATACATGCGTGGATGTGGGAGCAAGACCATTAGGGAACATTTGAAGACTAAAGTGCGGAAACATCTTGCATACCTTGGATGGAAAATTGAGTGGGCTGAAGATAAACATTTTCCTGGGAGAGGACGCTACAGGTACACGTCACCTGATGAAGCACAGGACCAGAAGCCTTACACTTCAATTATTAAAGTTTTGACACATTTGAAAATGGAGTCCAACATGAACACTGTGCAGCCCCCAATTGATCACAACAGGATGCATTCTACAAATGACACTAATCTTTCACAACTGCTTTCAGATCTACCCTCAAATGACCAGGATGTGGATGATTGTCCTCCAAATGGGAAACCTTCTTATGTTGAAGTTGCAGTTGAGCCAGAGTTTTGTCCTCAAGCTGTTGTGAAATATTACTTGAAAGCATCAAAGAAACATTGGGTTGATATAGGAAAATGGAGACTGAAAGCTAAGAAGCATTTGTTAGCAGAAGGATGGACCTTTGACTACCCAACCAAGAAGCGTAAGACAACTTTGTACGTTTCTCCCCGAAATCAGTGTTTGGGCCTACTTCGCGGTGCATGCAGAATATACATTAAAGAAAAGATTCCTGAATGGACTAATTCTGGCATGATACCTTCGAATGGGAACAATGATGATCATGTTGATACTGATGATCTATTACTAATTTTGTCCCAATTGCTAAAAGAAGAACCCGAGTTGCTAACTGCTTCACCAGAAAGTAGATCAACTGAGAATAGAAACCTTAGACACACCAGGAATTCAAAGGCTTCCATGCCAAGGAGCCACAGGAAAGAATCACCAACACGGGTGCTAAGATCAAGCAAAAGAGTGCAGAAGGTGACTGCCTCTAGTCTGTCACTCCAGAGACCTCAAAATGTCCTTTCCTGGTTAATAGATAACGGCGTGGTGATGTCAAGATGTAAGGTCTATTACTGGACAGAAGAAGGAGGCATGAACTCTAATCGGGCTGAAGGAAGGATAACTTATGATGGAATCAAGTGTAGCTGCTGCTTGAAAATATATGGTCTTGGTGGCTTTGTAAATCATGCTGGTGGAAGGGGTGACTGCAGACCTTCTGCTTGTATCCTTTTGAAGGATGGTAGGTCACTCTTAGATTGCATGATAAAAGTGATGCATGATCATGGAACATGGGAAGATACGGACAGACCATGCAATGAATTATTTGATGGCGAAAATGACAACATTTGTTCTGTCTGTCAATATGGCGGTGAACTTATTTTATGTGACCGATGTCCATCTGCATTTCATAGGACGTGTGTTGGTTTGGAGATCATCTTAGATGCTTCATCAAAGGTAGAGAAAAATATCAGTGAAGAAGATATATGGAAAATTGGTTGTGTGGAAAGGAGTGTTTTGTTTTTGTGGATGACTGCACATGTTGATCAATATTGTAATGTTTATGATATTTGTTGTCAACCCTATGTAGATCACGTTGGATGCTTGAAAAGTAGAGAAGGATTGGAGTTTAGAAATTATAAGGAAAATAGGTTGTGTGGAAAAGAGTGTGAACAGCTAATGAGCCAGTCAACTATGGAAGATTTTGGTTATGGATATCTAGAAGAAAGCCTCAAAAGTCTATTAGGAAAGCCATTTATAGTGGGTGCGAACGATCTAACTTGGACAATTGTCAAGTTTAGGAGTCGAGAGGTTGATAGCACTAAGAATGATATATTGGCAGAGAAATACAGCAAACTCAGTGTTGCACTTTCGGTGATGCACGAGTGTTTTGAGCCACTGGAGAACCCTTTAACTAATAGAGATATCATTGATGATGTTATATTCAACACTAGGTCGGGCCTTAATCGATTGAATTTCTGGGGTTTCTACATTGTACTTCTGGAGCAAAATGAAGAACTGATTAGTGTAGCAACTATTAGGATATTTGGAAAGAAAGTAGCCGAGGTGCCACTTGTAGGTACCAGAATACAATATCGTCGACTTGGAATGTGCAGAATTTTAATGAATGAGCTTGAGAAGAGGCTCAGGGAACTAGAAGTGGAGAGGCTAGTCTTGCCCGCAGTTCCCAGCGTGCTAGAAACATGGACCAATGGTTTTGGTTTCTCACAGATGACGACTTTCGAGAGGTCGCAGTACTTGAAATATCCTTTCCTAGATTTTCAGGAGACCATCATGTGCCAGAAGCTGTTGACAATTAGTCCGTCCCCTGAGTCAGGCCTGACAAGAGAGGCACAACCAAAACCAGATGATGATGGTGGTGATGGTGTCAAATGTAAAGTTCACTTTGACAAGTCCAATTCAGCATCTGAAGTGGACCAAGATGAAGAAGAGATTGACAAAAGTAATCTACAAGTGGTGGAGTGTGTCCCAACTCTGCCTACTTCCTAA 3561 0.4254 MSLNHSPMDFDGENSSGCSTRKKGSRKRKLLVNERVEVKSVEEGFQGSWHPGKVVRCERQKRHVKYDNILDDGESKYLVDVVRVSAVLDGTASTSDGRIERGFLRPVPPPVAFGENDLPFGLCVDVYYAEAWWEGIMFDHSNGKEVRSVLFPDLGDEIRVGIHQLRITQDWDEATENWEPRGKWTFIEVVEECEKESVVAVSLKQIWYDVRATTEFDDNIKHWTCNVKELWRNPVYEVIGDYYVLTLQQVFPALNLPKDFLKVTPELKSVELTDNIHCDAGQSDVFGSDIDDSPMEDGDAPNLFDSNKKCGGITPLQEEYDKDPSVDEASEKEIILQEEPASPVQEIMPETGGEEMPGASGCGKKRKRRCSESIYWKPLVLNKVELCPDVINEYMRGCGSKTIREHLKTKVRKHLAYLGWKIEWAEDKHFPGRGRYRYTSPDEAQDQKPYTSIIKVLTHLKMESNMNTVQPPIDHNRMHSTNDTNLSQLLSDLPSNDQDVDDCPPNGKPSYVEVAVEPEFCPQAVVKYYLKASKKHWVDIGKWRLKAKKHLLAEGWTFDYPTKKRKTTLYVSPRNQCLGLLRGACRIYIKEKIPEWTNSGMIPSNGNNDDHVDTDDLLLILSQLLKEEPELLTASPESRSTENRNLRHTRNSKASMPRSHRKESPTRVLRSSKRVQKVTASSLSLQRPQNVLSWLIDNGVVMSRCKVYYWTEEGGMNSNRAEGRITYDGIKCSCCLKIYGLGGFVNHAGGRGDCRPSACILLKDGRSLLDCMIKVMHDHGTWEDTDRPCNELFDGENDNICSVCQYGGELILCDRCPSAFHRTCVGLEIILDASSKVEKNISEEDIWKIGCVERSVLFLWMTAHVDQYCNVYDICCQPYVDHVGCLKSREGLEFRNYKENRLCGKECEQLMSQSTMEDFGYGYLEESLKSLLGKPFIVGANDLTWTIVKFRSREVDSTKNDILAEKYSKLSVALSVMHECFEPLENPLTNRDIIDDVIFNTRSGLNRLNFWGFYIVLLEQNEELISVATIRIFGKKVAEVPLVGTRIQYRRLGMCRILMNELEKRLRELEVERLVLPAVPSVLETWTNGFGFSQMTTFERSQYLKYPFLDFQETIMCQKLLTISPSPESGLTREAQPKPDDDGGDGVKCKVHFDKSNSASEVDQDEEEIDKSNLQVVECVPTLPTS 1186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1850 1186 MobiDBLite consensus disorder prediction 656 670 - -
Aed3g1850 1186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 794 854 IPR013083 -
Aed3g1850 1186 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 975 1103 IPR016181 -
Aed3g1850 1186 SUPERFAMILY FYVE/PHD zinc finger 794 830 IPR011011 -
Aed3g1850 1186 MobiDBLite consensus disorder prediction 1134 1162 - -
Aed3g1850 1186 SMART agenet_At_2 28 90 IPR014002 -
Aed3g1850 1186 SMART agenet_At_2 116 173 IPR014002 -
Aed3g1850 1186 MobiDBLite consensus disorder prediction 1127 1186 - -
Aed3g1850 1186 CDD NAT_SF 1015 1076 - -
Aed3g1850 1186 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 960 1121 IPR000182 GO:0016407
Aed3g1850 1186 MobiDBLite consensus disorder prediction 1 19 - -
Aed3g1850 1186 MobiDBLite consensus disorder prediction 631 673 - -
Aed3g1850 1186 SMART PHD_3 800 852 IPR001965 -
Aed3g1850 1186 MobiDBLite consensus disorder prediction 1 26 - -
Aed3g1850 1186 Pfam Tify domain binding domain 723 774 IPR032308 -
Aed3g1850 1186 PANTHER PHD ZINC FINGER PROTEIN 7 1178 - -
Aed3g1850 1186 Gene3D - 951 1123 - -
Aed3g1850 1186 Pfam Agenet domain 34 109 IPR008395 -
Aed3g1850 1186 Coils Coil 1052 1072 - -
Aed3g1850 1186 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 7 1178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1850 Aed-Chr3 22926948 22933327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1850 30 442 PHD Transcription Factor Family AT5G58610 34.286 2.16e-60 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1850 - - gmx:102661511 1636.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g1850 3 22926948 22933327 Aed3g1850 3 22926948 22933327 ECH
Aed4g2245 4 25100036 25108886 Aed3g1850 3 22926948 22933327 PCT