Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1835 ATGGATTTCATGGTAAGAGGAGGAAGTCATGGTGTTAATGGCTTTCAAATTTATGGCTGTGAAGCTATAAACCCTCCTTTGAGTAAAGCCATAGGCATAGATAGGTTCTTACATGCAAGGAACAATGATGCAAGTGTTTTTGCTGCTGAGGAGGGTTTTAATAAGTGGAGAAATATCAATCAAAATTACCCTACTACACTGTGCCTGAAAGATCATATGCAAGTTTCAGGTAAGATTAATAATAATAATGCCAACGTGGTGGGAAGTAGAAGCAAGAAAAAGTCTTCTGCTGCTGTGTGTTGGATCAAAGGACAGTGGAATAAAGAAGAGGACAGGAAACTGGTGAGGTTGGTGAAACAATATGGTGAAAGAAAATGGGCTGAAATAGCTGAGAAGGTTGAGGGAAGGGTTGGCAAGCAGTGCCGAGAAAGATGGAATAATCATTTGCGTCCTGATATTAAGAAAGATAGTTGGAGTGAAGAAGAAGAGAGAATTCTAGTGGACAACCACGCTAGGCTCGGAAACCGTTGGTGCGAGATAGCAAAAGTGATTCCAGGAAGATCAGAGAATGGCATAAAGAACCATTGGAATGCCACCATTAGGAAACAGAATTCAAAGAGAAAGAACAAGAAGAAGAATACCACAAAGAAGCCACATTATTCCTCTATACTTGAAGACTACATCAGAAGCAAAACTACTCAAATAGTTGCTGCCACAGATAATAACACCACCTCTCTCGCAAACCCTTTAAACCCTGTGCTCTTTGAACCTTATGTTAATGAACTACTCTTGATGGAACAAGTTGAAGCCTCTGAGATGTCTGCTGCAACCTCGTACTTGGATTATTGTGGTCAAATGAATAATGTTGTTGATCATGATGTTGGTGATGAGTGTGGATTTGTGTACCCAGATAATAATAACTACATGCACTTGAATGATGGTGTCTTCTACCCTAGGGAGACTCAATATTCCACCTCCTTAAGTTATATACCTAATTCAGATCATCTTTATCTCTCAGCTCACTGCAATGTAGCACCCGGTGGTAATTATTATGGGAATATCAAAATCTGA 1071 0.3978 MDFMVRGGSHGVNGFQIYGCEAINPPLSKAIGIDRFLHARNNDASVFAAEEGFNKWRNINQNYPTTLCLKDHMQVSGKINNNNANVVGSRSKKKSSAAVCWIKGQWNKEEDRKLVRLVKQYGERKWAEIAEKVEGRVGKQCRERWNNHLRPDIKKDSWSEEEERILVDNHARLGNRWCEIAKVIPGRSENGIKNHWNATIRKQNSKRKNKKKNTTKKPHYSSILEDYIRSKTTQIVAATDNNTTSLANPLNPVLFEPYVNELLLMEQVEASEMSAATSYLDYCGQMNNVVDHDVGDECGFVYPDNNNYMHLNDGVFYPRETQYSTSLSYIPNSDHLYLSAHCNVAPGGNYYGNIKI 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1835 356 Gene3D - 156 225 - -
Aed3g1835 356 CDD SANT 157 197 IPR001005 -
Aed3g1835 356 ProSiteProfiles Myb-like domain profile. 103 149 IPR001005 -
Aed3g1835 356 PANTHER MYB PROTEIN-RELATED 31 352 - -
Aed3g1835 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 103 153 IPR017930 -
Aed3g1835 356 Gene3D - 102 154 - -
Aed3g1835 356 SMART sant 154 202 IPR001005 -
Aed3g1835 356 SMART sant 102 151 IPR001005 -
Aed3g1835 356 Pfam Myb-like DNA-binding domain 106 163 - -
Aed3g1835 356 PANTHER MYB TRANSCRIPTION FACTOR 31 352 - -
Aed3g1835 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 154 204 IPR017930 -
Aed3g1835 356 SUPERFAMILY Homeodomain-like 102 196 IPR009057 -
Aed3g1835 356 CDD SANT 106 149 IPR001005 -
Aed3g1835 356 ProSiteProfiles Myb-like domain profile. 150 200 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1835 Aed-Chr3 22778884 22780524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1835 25 230 MYB Transcription Factor Family AT5G58850 48.523 2.22e-63 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed3g1835 Myb_DNA-bind_6 9.1e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1835 K09422 - gmx:102666818 380.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g1835 3 22778884 22780524 Aed3g1835 3 22778884 22780524 ECH