Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1833 ATGGCTACTAAGTTTGCAAGAAGGACTGAGGTTGGTGGAATAACATGCTCTTATTGGAGAGCTGGGAGATGCACCCGAAACCCTTGCAGGTTTCTGCACGCAGAAACACCGTCATCACATACTGCCTTTGGTGATAATGTCAATTCTGCTCATGGATACAGAAAAAGACCTTACTCTGCCTCTCCCAATGTCCCTAAATATAATTCCAAGCCAAGGACACTTTTGATTAGAGGAGATGCAGCAATAAAGGTTGCTCAGGCCTCAAAGAAGTCATCAGGGATATGTAAATACTGGACAAACAATAACTGTGTTCATGGTGAACAATGCACGTATATACATTCATGGTCTCACGGTGATGGGATTTCCTCAATAAAAAATCTTCATGAACACAAGAAGGTTATCACTGGCATTGCGCTTCCTCCTGGATCTGACAAACTTTATTCTGGTAGCACTGATGGGACAGTTTGGATATGGTACTATCGTACTGGTCAATGTGCTAAAGTCATCAATCTTGGTGCTGAGGTTACCTCTTTGATCAATGAGGGGCCATGGATATTTGTTGGTCTACAAAATGCTATTAAGGCTTGGAATATCGAGACCATTTCGGAATTTACTCTTGATGGACCCAAAGGTCCAGTCCGTGCCATGACGGTTGGCAATGATACACTCTTTGCTGGTGGAGAGGATGGTGTTATTTCTGCCTGGAGAGGAAGCTCTGAAGCTAAGTCTCCTTTTGAACTGGTTGCGTCACTCACTGGCCACACTAAAGCAGTGGTTTCCCTGACTGTTGGACGCAAGATGCTGTACTCTGGGTCCATGGACAAAAGCATAAAGGTCTGGGCTTGCATTGAAGTGGGAACTTTGAAAGTGATATATACGCATACGGAAGAAAATGGTGTTGTTTCACTTTCGGGGATGTCTGATGCAGAAGGCAAACATACATTGTTTGCCTCTTGTAAAGACAATTCAGTTCGCATGTATGAATTGCCATCGGGTCGTTTATTTGCTAAGAAAGATGTTGCATCGATTGAGCTAGGTCCTGGTGGCCACTTCTTCACTGGAGATGGGACTGGTTTGCTGATGATGTGGAAATGGTTGGAAGTACCATCCAAGGTGGAATCCTCTTGA 1128 0.4415 MATKFARRTEVGGITCSYWRAGRCTRNPCRFLHAETPSSHTAFGDNVNSAHGYRKRPYSASPNVPKYNSKPRTLLIRGDAAIKVAQASKKSSGICKYWTNNNCVHGEQCTYIHSWSHGDGISSIKNLHEHKKVITGIALPPGSDKLYSGSTDGTVWIWYYRTGQCAKVINLGAEVTSLINEGPWIFVGLQNAIKAWNIETISEFTLDGPKGPVRAMTVGNDTLFAGGEDGVISAWRGSSEAKSPFELVASLTGHTKAVVSLTVGRKMLYSGSMDKSIKVWACIEVGTLKVIYTHTEENGVVSLSGMSDAEGKHTLFASCKDNSVRMYELPSGRLFAKKDVASIELGPGGHFFTGDGTGLLMMWKWLEVPSKVESS 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1833 375 SMART WD40_4 330 364 IPR001680 GO:0005515
Aed3g1833 375 SMART WD40_4 244 281 IPR001680 GO:0005515
Aed3g1833 375 SMART WD40_4 199 236 IPR001680 GO:0005515
Aed3g1833 375 SMART WD40_4 287 328 IPR001680 GO:0005515
Aed3g1833 375 SMART WD40_4 120 159 IPR001680 GO:0005515
Aed3g1833 375 SMART c3hfinal6 91 115 IPR000571 GO:0046872
Aed3g1833 375 SMART c3hfinal6 6 35 IPR000571 GO:0046872
Aed3g1833 375 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 251 280 - -
Aed3g1833 375 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 274 375 - -
Aed3g1833 375 Gene3D - 179 374 IPR015943 GO:0005515
Aed3g1833 375 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 127 164 - -
Aed3g1833 375 Pfam WD domain, G-beta repeat 125 158 IPR001680 GO:0005515
Aed3g1833 375 Pfam WD domain, G-beta repeat 246 280 IPR001680 GO:0005515
Aed3g1833 375 PANTHER - 9 280 IPR044715 -
Aed3g1833 375 PANTHER - 274 375 IPR044715 -
Aed3g1833 375 Gene3D - 121 178 IPR015943 GO:0005515
Aed3g1833 375 ProSiteProfiles Trp-Asp (WD) repeats profile. 127 168 IPR001680 GO:0005515
Aed3g1833 375 Gene3D - 13 117 - -
Aed3g1833 375 ProSiteProfiles Zinc finger C3H1-type profile. 89 116 IPR000571 GO:0046872
Aed3g1833 375 ProSiteProfiles Zinc finger C3H1-type profile. 15 36 IPR000571 GO:0046872
Aed3g1833 375 SUPERFAMILY WD40 repeat-like 100 365 IPR036322 GO:0005515
Aed3g1833 375 ProSiteProfiles Trp-Asp (WD) repeats profile. 251 280 IPR001680 GO:0005515
Aed3g1833 375 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 9 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1833 Aed-Chr3 22771451 22773924 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aed3g1833 WD40 0.002 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1833 - - gmx:100787799 563.533