Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1832 ATGGCTACTAAGTTTGCAAGAAGGACTGAGGTTGGTGGAATAACATGCTCTTATTGGAGAGCTGGGAGATGCACCCGAAACCCTTGCAGGTTTCTGCACGCAGAAACACCGTCATCACATACTGCCTTTGGTGATAATGTCAATTCTGCTCATGGATACAGAAAAAGACCTTACTCTGCCTCTCCCAATGTCCCTAAATATAATTCCAAGCCAAGGACACTTTTGATTAGAGGAGATGCAGCAATAAAGGTTGCTCAGGCCTCAAAGAAGTCATCAGGGATATGTAAATACTGGACAAACAATAACTGTGTTCATGGTGAACAATGCACGTATATACATTCATGGTCTCACGGTGATGGGATTTCCTCAATAAAAAATCTTCATGAACACAAGAAGGTTATCACTGGCATTGCGCTTCCTCCTGGATCTGACAAACTTTATTCTGGTAGCACTGATGGGACAGTTTGGATATGGTACTATCGTACTGGTCAATGTGCTAAAGTCATCAATCTTGGTGCTGAGGTTACCTCTTTGATCAATGAGGGGCCATGGATATTTGTTGGTCTACAAAATGCTATTAAGGTAAGCCCTTCTGTCCTGTTTTTTGTTTTTAGGTATGGCTTGGAATATCGAGACCATTTCGAATTTACTCTTGATGGACCCAAAGGTCCAGTCCGTGCCATGACGGTTGGCAATGATACACTCTTTGCTGGTGGAGAGGATGGTGTTATTTCTGCCTGGAGAGGAAGCTCTGAAGCTAAGTCTCCTTTTGAACTGGTTGCGTCACTCACTGGCCACACTAAAGCAGTGGTTTCCCTGACTGTTGGACGCAAGATGCTGTACTCTGGGTCCATGGACAAAAGCATAAAGAAGGCAAACATACATTGTTTGCCTCTTGTAAAGACAATTCAGTTCGCATGTATGAATTGCCATCAGAGGGGTCGTTTATTTGCTAAGAAAGATGTTGCATCGATTGAGCTAGGTCCTGGTGGCCACTTCTTCACTGGAGATGGGACTGGTTTGCTGATGATGTGGAAATGGTTGGAAGTACCATCCAAGGTGGAATCCTCTTGA 1074 0.4395 MATKFARRTEVGGITCSYWRAGRCTRNPCRFLHAETPSSHTAFGDNVNSAHGYRKRPYSASPNVPKYNSKPRTLLIRGDAAIKVAQASKKSSGICKYWTNNNCVHGEQCTYIHSWSHGDGISSIKNLHEHKKVITGIALPPGSDKLYSGSTDGTVWIWYYRTGQCAKVINLGAEVTSLINEGPWIFVGLQNAIKVSPSVLFFVFRYGLEYRDHFEFTLDGPKGPVRAMTVGNDTLFAGGEDGVISAWRGSSEAKSPFELVASLTGHTKAVVSLTVGRKMLYSGSMDKSIKKANIHCLPLVKTIQFACMNCHQRGRLFAKKDVASIELGPGGHFFTGDGTGLLMMWKWLEVPSKVESS 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1832 357 SMART WD40_4 211 248 IPR001680 GO:0005515
Aed3g1832 357 SMART WD40_4 309 346 IPR001680 GO:0005515
Aed3g1832 357 SMART WD40_4 256 293 IPR001680 GO:0005515
Aed3g1832 357 SMART WD40_4 120 159 IPR001680 GO:0005515
Aed3g1832 357 SMART c3hfinal6 91 115 IPR000571 GO:0046872
Aed3g1832 357 SMART c3hfinal6 6 35 IPR000571 GO:0046872
Aed3g1832 357 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 127 164 - -
Aed3g1832 357 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 312 357 - -
Aed3g1832 357 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 9 304 - -
Aed3g1832 357 Pfam WD domain, G-beta repeat 125 158 IPR001680 GO:0005515
Aed3g1832 357 SUPERFAMILY WD40 repeat-like 99 347 IPR036322 GO:0005515
Aed3g1832 357 ProSiteProfiles Trp-Asp (WD) repeats profile. 127 168 IPR001680 GO:0005515
Aed3g1832 357 PANTHER - 312 357 IPR044715 -
Aed3g1832 357 PANTHER - 9 304 IPR044715 -
Aed3g1832 357 ProSiteProfiles Zinc finger C3H1-type profile. 89 116 IPR000571 GO:0046872
Aed3g1832 357 Gene3D - 14 117 - -
Aed3g1832 357 Gene3D - 121 195 IPR015943 GO:0005515
Aed3g1832 357 ProSiteProfiles Zinc finger C3H1-type profile. 15 36 IPR000571 GO:0046872
Aed3g1832 357 Gene3D - 211 356 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1832 Aed-Chr3 22755036 22757197 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aed3g1832 WD40 0.0012 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1832 - - gmx:100787799 404.06