Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1828 ATGAAGTGGGAAAGCATAACCCTCTCTTCTCCTACCACACCTTGTACTACTCCCAACTCCAATACCAATTGGTTGGTGGAAGATAGAAGGAGCACAAAATGGACCTCTGAAGAGAACAAGCTCTTTGAAAATGCTCTTGCACTGTATGATAAGGACACATCAGATCGGTGGCACAAAGTAGCTGAAATGATTCCTGGGAAGACAGTGGTTGATGTGATAAGACAGTACAAGGAGTTGGAAGTGGATGTTAGCAATATAGAAGCTGGTTTGATCCCAGTTCCTGGCTATAGTAGCACTGCTACCTCACCCTTCACCTTGGATTGGGTTAACACTTCTGGTTATGATGGTTTCAAAGGAAGTGGAAAGAGATCTTCCTCAGTGAGGCCTCATCATGAGCATGAAAGGAAGAAAGGAGTGCCTTGGACTGAAGAGGAACATAAATTGTTTCTACTGGGTCTGAAGAAGTATGGGAAAGGTGATTGGAGAAACATTTCTCGCAATTTCGTGATTACTAGAACTCCAACACAGGTTGCTAGCCATGCTCAGAAGTACTTCATAAGGCAACTTTCAGGAGGCAAAGACAAGAGGAGAGCTAGCATACATGACATAACAACAGTGAATCTCACAGAAACCATCGTCACAACTTCTTCTTCAGAAGACACCAATGTGCTCTCGAAGCAGCATCCAAATTCTACTCCTACTACTCCAAGAACTCATTTTCAGTGGAGTAACCACTCTAGCACAGGAGTAGCAGCAGCTATGACTATCAACAACCCTGCTCATGAAAGAGTGTTTATGTCTCCTTATGGTGTTAATAACTCCTTTGGGGTTAAAATTGAGGGACAGAATAGTGCTCTTCATGAGTCTTATAACTTTGGACCTCAGACACAGAACATGGTTTTCCAAATGCAACAACAGTCCTCACAAAACTAG 933 0.4298 MKWESITLSSPTTPCTTPNSNTNWLVEDRRSTKWTSEENKLFENALALYDKDTSDRWHKVAEMIPGKTVVDVIRQYKELEVDVSNIEAGLIPVPGYSSTATSPFTLDWVNTSGYDGFKGSGKRSSSVRPHHEHERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLTETIVTTSSSEDTNVLSKQHPNSTPTTPRTHFQWSNHSSTGVAAAMTINNPAHERVFMSPYGVNNSFGVKIEGQNSALHESYNFGPQTQNMVFQMQQQSSQN 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1828 310 MobiDBLite consensus disorder prediction 125 139 - -
Aed3g1828 310 MobiDBLite consensus disorder prediction 119 139 - -
Aed3g1828 310 CDD SANT 33 79 IPR001005 -
Aed3g1828 310 Gene3D - 26 93 - -
Aed3g1828 310 ProSiteProfiles Myb-like domain profile. 26 80 IPR001005 -
Aed3g1828 310 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 14 285 IPR043363 -
Aed3g1828 310 SUPERFAMILY Homeodomain-like 32 84 IPR009057 -
Aed3g1828 310 SMART sant 137 187 IPR001005 -
Aed3g1828 310 SMART sant 30 82 IPR001005 -
Aed3g1828 310 MobiDBLite consensus disorder prediction 217 242 - -
Aed3g1828 310 ProSiteProfiles SANT domain profile. 141 189 IPR017884 -
Aed3g1828 310 SUPERFAMILY Homeodomain-like 135 188 IPR009057 -
Aed3g1828 310 ProSiteProfiles Myb-like domain profile. 133 185 IPR001005 -
Aed3g1828 310 Pfam Myb-like DNA-binding domain 33 77 IPR001005 -
Aed3g1828 310 Pfam Myb-like DNA-binding domain 140 185 IPR001005 -
Aed3g1828 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 133 189 IPR017930 -
Aed3g1828 310 ProSiteProfiles SANT domain profile. 29 84 IPR017884 -
Aed3g1828 310 PANTHER MYB TRANSCRIPTION FACTOR MYB51 14 285 - -
Aed3g1828 310 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 136 188 IPR006447 GO:0003677
Aed3g1828 310 CDD SANT 140 185 IPR001005 -
Aed3g1828 310 Gene3D - 139 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1828 Aed-Chr3 22729269 22731921 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed3g1828 Myb_DNA-binding 1.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1828 - - gmx:778034 459.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g1828 3 22729269 22731921 Aed3g1828 3 22729269 22731921 ECH
Aed3g1828 3 22729269 22731921 Aed3g2131 3 25102943 25105270 ECH
Aed3g1828 3 22729269 22731921 Aed2g1191 2 10243536 10244003 ECH
Aed3g1828 3 22729269 22731921 Aed4g2280 4 25365920 25368601 ECH
Aed9g1974 9 23056039 23058682 Aed3g1828 3 22729269 22731921 ECH
Aed2g1191 2 10243536 10244003 Aed3g1828 3 22729269 22731921 ECH