Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1819 ATGGGTTACTTGTGTGATTTTTGTGGAGACCAGAGGTCCTTGGTGTACTGCCGCTCCGATGCCGCGTGCTTATGTTTGTCGTGTGATCGGAATGTTCATTCTGCTAATGCGCTTTCTAAGCGTCATTCGAGAACACTTGTATGCGAGAGATGTAATTCACAGCCTGCATTTGTGAGGTGTGTTGAAGAGAAAATCTCACTTTGTCAGAACTGTGATTGGTTGGGTCACGGTACCTCGCCGTCTTCTACGGCACACAAGAGGCAATCAATCAATTGCTACTCTGGCTGCCCTTCAGCTGCAGAATTTTCTTCAACGTGGTCCTTTTTCTTAGACATCCCTTCTATGGGTGAAGCATGTGAGCAGGAACTAGGCTTGATGAGCATTAATGAGAACAGCAGCAAGGGTGCTTGGGTTCCTCCAGAAGAGCAGAATGTGTCTGGCTCAGAAGTCACTGATCTACCCAGCAAGGGTAAATCTTGGGTTCGCACATCTTCAATACCCGAGTCAAGCTCCGAACCTTGCATTCTGGACCAGCCACCTCGACCTGCCAATGAATGTATGCCCAAGCTGTACTGTCCTGGGAAGAAAGTTTCTGGAATATGTGAAGATGATGATCTATATGATGATTTCATCATGGATGAAGTGGATCTAGAACTTGAGAACTATGAGGAACTTTTTGGGATGGCTCTCAGTCATTCTCAAGAGCTTTTTGAAAATGGTGGAATTGGTAGCTTATTTGAGACCAAGGACATGTCTGCTAGTGCTGGTGATTCCCATTGTCAGGGTGCTGTTGCTTCTGAGGCATCATCTGCTGGGTTGGTCAATGCTATCCAACCAGCATTCAGCAATGCAGCATCTGCAGATTCAATGTTGAGTACAAAAACTGAACCAATTGTTTGTTTTACGGCAAAGCAATCTCAATCGAACATTTCTTTTTCTGGTCTTACCAAAGATAGTGCTGGTGACTATCAAGACTGTGGTGCTTCTTCAATGCTTCTCATGGGAGAGCCTCCCTGGTGTCCTCCTTGCCCTGAGAGTTCTCTGCATTCTGCTAACCGCAGCAGCGCTGTCATGCGCTATAAGGAAAAGAAGAAGACCCGGAAGTTTGAGAAGAAAGTAAGGTATGCCTCTCGCAAGGCTAGGGCTGATGTCAGAAAGCGCGTGAAGGGCCGATTTGTGAAAGCTGGTGATAGCTATGACTATGACCCTTTGAACCAAACCAGAAGCTGCTGA 1233 0.4647 MGYLCDFCGDQRSLVYCRSDAACLCLSCDRNVHSANALSKRHSRTLVCERCNSQPAFVRCVEEKISLCQNCDWLGHGTSPSSTAHKRQSINCYSGCPSAAEFSSTWSFFLDIPSMGEACEQELGLMSINENSSKGAWVPPEEQNVSGSEVTDLPSKGKSWVRTSSIPESSSEPCILDQPPRPANECMPKLYCPGKKVSGICEDDDLYDDFIMDEVDLELENYEELFGMALSHSQELFENGGIGSLFETKDMSASAGDSHCQGAVASEASSAGLVNAIQPAFSNAASADSMLSTKTEPIVCFTAKQSQSNISFSGLTKDSAGDYQDCGASSMLLMGEPPWCPPCPESSLHSANRSSAVMRYKEKKKTRKFEKKVRYASRKARADVRKRVKGRFVKAGDSYDYDPLNQTRSC 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1819 410 CDD Bbox1_BBX-like 4 47 - -
Aed3g1819 410 MobiDBLite consensus disorder prediction 140 177 - -
Aed3g1819 410 MobiDBLite consensus disorder prediction 140 172 - -
Aed3g1819 410 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Aed3g1819 410 SMART bboxneu5 4 47 IPR000315 GO:0008270
Aed3g1819 410 SMART bboxneu5 48 90 IPR000315 GO:0008270
Aed3g1819 410 CDD Bbox1_BBX-like 47 90 - -
Aed3g1819 410 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 1 409 - -
Aed3g1819 410 Pfam CCT motif 353 395 IPR010402 GO:0005515
Aed3g1819 410 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 409 - -
Aed3g1819 410 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Aed3g1819 410 ProSiteProfiles CCT domain profile. 353 395 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1819 Aed-Chr3 22671561 22678854 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1819 1 409 C2C2-CO-like Transcription Factor Family AT5G48250 56.429 2.52e-149 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Aed3g1819 CCT 7.6e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1819 - - gmx:100783016 751.51