Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1813 ATGGGAGAAGGAGAGAACACAGAAATAGAAACAGAAACAGAATCAGAAGCAACATCTTCGACATGGAGCCTCGGAAAACACACTCAGATAATCGAACTTTCGGAGAAGCTGACGAACGGGAATCTCAACCTCAAGATTGAGGCCGCGAGGGAGATAAGGAGGATCGTTCGGAAATCGTCCTCGTCCTCGTCGAAGACGCGCGCCAAGCTCGCCGCAGCTGGTGTCATTGAACCTCTCGTGCTTATGCTCTCTTCTTCCAACGTCGACGCGCGCCATTCCTCTCTCCTCGCTCTCCTCAACCTCGCTGTTCGCAACGAACGAAACAAGGTCAAAATAGTGACAGATGGTGCCATGCCTCCACTGGTGGAGCTCCTCAAGATGCAAAATAGCGGTATACGAGAATTGGCTACAGCTGCAATCTTATCACTCTCAGCTGCTGCATCCAACAAGCCCATTATTGCCGCATCTGGAGCTGCACCTCTCCTTGTTCAGATTCTCAAATCTGGAAGTGTTCAAGGCAAAGTTGATGCTGTTACAGCCCTCCACAATCTTTCTACTGGCATAGAGAATTCCATTGAACCTCTTGATGCAAGTGCTGTTTTCCCTCTGATCAACCTCCTTAAAGAGTGCAAGAAGTATTCCAAGTTTGCAGAAAAAGCTACAGCACTGCTTGAAATCCTTTCCAACTCCGACGAAGGACGAACCGCAATCACAATTGCAGATGGGGGAATCTTAACGCTAGTAGAGACAGTTGAAGATGGATCACTTGTCAGCACAGAACATGCTGTTGGAACCCTGCTATCATTATGTAAAAGCTGCCGAGATAAATACCGGGAACTGATTCTCAAAGAAGGAGCAATTCCAGGTCTGTTACGTCTGACAGTGGAGGGCACAGTTGAAGCTCAAGATAGAGCACGTGTGCTCCTGGATTTGCTCAGAGATTCTCCCCCAAAGAGACTAACCTCATCAGTTTTGGAGAAAATTGTTTATGACATTGCTGAAAGGGTAGATGGAGCAGATAAAGCTGCTGAAACTGCCAAACGGTTATTGCAAGATATGGTCCAAAGGAGTATGGAACACAGCATGAAATGCATCCAGCATAGGTCTGCATCTTGCACTCCTTCTATTCCATCCACTTGA 1140 0.4728 MGEGENTEIETETESEATSSTWSLGKHTQIIELSEKLTNGNLNLKIEAAREIRRIVRKSSSSSSKTRAKLAAAGVIEPLVLMLSSSNVDARHSSLLALLNLAVRNERNKVKIVTDGAMPPLVELLKMQNSGIRELATAAILSLSAAASNKPIIAASGAAPLLVQILKSGSVQGKVDAVTALHNLSTGIENSIEPLDASAVFPLINLLKECKKYSKFAEKATALLEILSNSDEGRTAITIADGGILTLVETVEDGSLVSTEHAVGTLLSLCKSCRDKYRELILKEGAIPGLLRLTVEGTVEAQDRARVLLDLLRDSPPKRLTSSVLEKIVYDIAERVDGADKAAETAKRLLQDMVQRSMEHSMKCIQHRSASCTPSIPST 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1813 379 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 198 242 IPR000225 GO:0005515
Aed3g1813 379 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 74 116 IPR000225 GO:0005515
Aed3g1813 379 Gene3D - 10 374 IPR011989 -
Aed3g1813 379 PANTHER U BOX DOMAIN-CONTAINING 10 345 - -
Aed3g1813 379 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 10 345 - -
Aed3g1813 379 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 116 158 IPR000225 GO:0005515
Aed3g1813 379 SUPERFAMILY ARM repeat 33 318 IPR016024 -
Aed3g1813 379 Pfam Armadillo/beta-catenin-like repeat 149 185 IPR000225 GO:0005515
Aed3g1813 379 Pfam Armadillo/beta-catenin-like repeat 105 144 IPR000225 GO:0005515
Aed3g1813 379 SMART arm_5 146 186 IPR000225 GO:0005515
Aed3g1813 379 SMART arm_5 104 145 IPR000225 GO:0005515
Aed3g1813 379 SMART arm_5 230 271 IPR000225 GO:0005515
Aed3g1813 379 SMART arm_5 63 103 IPR000225 GO:0005515
Aed3g1813 379 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1813 Aed-Chr3 22624748 22630929 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1813 28 320 U-box Gene Family AT3G54790 38.095 5.83e-38 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1813 K08332 - gmx:100782472 616.69