Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1807 ATGGGTGCTGTCGTGGAGTGCAACCCGCCGCCGCGCACGGCGGTGCTGTCCCTCAACACCTTGCCGTTGGGGTTCCGTTTCCGTCCCACCGATGAGGAGCTTATTGACTACTACCTGCGCTCGAAGATCAACGGAAATGGTGATGATGTTTGGGTTATCCGTGAGATTGATGTCTGCAAATGGGAGCCTTGGGACTTGCCTGATCAGATATCTATGGTAGGGTATTTAAGTTATCCTTATTTTGGGGGAAAAGGTAGTTTTGAATTGTTGAATCCATATGTCCTTTGTCGATTATTTAAGAAAAATGATGAGAGTATTGAATGTTCAAATGGTGATGATGTGGAGCGGCCTGCTTCAACTCCTATGACTACCCCCAATTACTCTCCCGATGAAATACAATCTGACCCAGCTCAGGTCCCAGCATCTTCCTCACAGATTACTGAAGATGATAAGTCTCCAGCAGTTATTGCTGGGAACTCTGAGGAAGCAATATCCAAGATTATAACCCCTGTTCATTGCCCTAGTGATGGATGTTATGCTCCTGATGCACCAAATCACATTGTAGAACCAGCTGCAGAGGAGGATCAGCCATCGACTGTGGAGATATTTTATGACCCAACAACTGGGCAATTAGATGGCACAATATTCTCCCCTCCCTATGCACATTTACCAGCTGATTTTTATCATCAAGTTAACAATCAATCAGAACTTCAATATGGTACAAATGAGAACGTTTCAGAATTTTTCCACTCAGTTATCAATTGGGATGCGATCTCTTATGATACCAGCAGTCTAGACCTGAGCTCGTCCTTAATTTATCCTAAGGACAATGGATCAGGCAGTGACTCAGATGTGGAAATGGCCAATATGCCGCATATGCAAGCATTACATAAGGAAGCAGTTGAGCAGGAGAGCAATGCGGGATTATTTCAGAACAATCCCCAGATGGCTTTCTCAAATGACAGTACTATGGGCCAAGTGTACAATGAGGTCAACTACTGTGAGCAACCAAGAAACATCGATGCATTTGTTAGTGGTGATGCTGGAATCAGAATAAGGACTCGTCCTGGAAGAAATGAGCAGCCAAACATGAACACAATGGTTCAATCGCAAGGTATTGCACCGAGGAGAATACGGTTGGGAGTCGTTAGACGTTCGCTTGGTTCCCAGGAGATGGCAAAAGACAGTAGCTGTGCCTGTGCCCCGGAAGACCATAATTCAAAAACCATCATTACTGTGGAGAAGGAAGCTTCAGAAAACCATGCTGCCGACGAGTGTTCCACCGTTACTGATGAGAGTTCCAACATTACCGATGATGAGGATGAACCAGAGGAGGCATCTCCTGAGTTGACCGACCAGAGAAAGATAAGTCAGCAACATGTTGCAACTGCAGAATCCATCTCGGGGTCGAAAAGGGGTGGTGGCCTCTACACCTCAAAGGTTTCCTCTAACCGTGCCGCCTCGTGGTCTCATGTTCTTGCAGTTTCTGCCACTGTATTGGTCTCAGCAGTACTCCTTGTTAATATATGGGCATATGTCGGATCTTAA 1548 0.458 MGAVVECNPPPRTAVLSLNTLPLGFRFRPTDEELIDYYLRSKINGNGDDVWVIREIDVCKWEPWDLPDQISMVGYLSYPYFGGKGSFELLNPYVLCRLFKKNDESIECSNGDDVERPASTPMTTPNYSPDEIQSDPAQVPASSSQITEDDKSPAVIAGNSEEAISKIITPVHCPSDGCYAPDAPNHIVEPAAEEDQPSTVEIFYDPTTGQLDGTIFSPPYAHLPADFYHQVNNQSELQYGTNENVSEFFHSVINWDAISYDTSSLDLSSSLIYPKDNGSGSDSDVEMANMPHMQALHKEAVEQESNAGLFQNNPQMAFSNDSTMGQVYNEVNYCEQPRNIDAFVSGDAGIRIRTRPGRNEQPNMNTMVQSQGIAPRRIRLGVVRRSLGSQEMAKDSSCACAPEDHNSKTIITVEKEASENHAADECSTVTDESSNITDDEDEPEEASPELTDQRKISQQHVATAESISGSKRGGGLYTSKVSSNRAASWSHVLAVSATVLVSAVLLVNIWAYVGS 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1807 515 Pfam No apical meristem (NAM) protein 22 69 IPR003441 GO:0003677|GO:0006355
Aed3g1807 515 MobiDBLite consensus disorder prediction 107 153 - -
Aed3g1807 515 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 91 365 - -
Aed3g1807 515 ProSiteProfiles NAC domain profile. 21 170 IPR003441 GO:0003677|GO:0006355
Aed3g1807 515 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 16 73 - -
Aed3g1807 515 MobiDBLite consensus disorder prediction 416 455 - -
Aed3g1807 515 Gene3D NAC domain 30 85 IPR036093 GO:0003677|GO:0006355
Aed3g1807 515 MobiDBLite consensus disorder prediction 116 150 - -
Aed3g1807 515 PANTHER NAC DOMAIN-CONTAINING PROTEIN 91 91 365 - -
Aed3g1807 515 PANTHER NAC DOMAIN-CONTAINING PROTEIN 91 16 73 - -
Aed3g1807 515 SUPERFAMILY NAC domain 15 72 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1807 Aed-Chr3 22566114 22570097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1807 15 68 NAC Transcription Factor Family AT3G49530 77.778 1.88e-23 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Aed3g1807 NAM 1.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1807 - - gmx:100778903 615.15