Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1779 ATGGGTAGGCGAAAAAGTAAACCACAGCGAGCAGGTGGGATAATACTAGAGACAAATGCTGCTACTGAGTTAGAATTGGATAAACAAAATGTTGAAGGAGGGGAAGAAGCAAAAGGTGATTCTAGTGGCATTGATAAACCTTATTTTGTTGAGGTTGATCAGTTGGATTGGTTGTCAAGGGAACACCTTGATATTTCTGAGGTTGTTTTGAGGGATTTAAATTTGAGAGAAGGTTTTTCTGGTTTTGAACTGTCTGAGGATTTTTATTGGGATCAGCAATACTTGTTAAGATTTCGGGTGTGTAATGTCAGTAATGTTCTTGGTCGAATTAAATTAGGCCATTGGCCCGTGTTACCCTATACGGATATTCATCTAGAGTTTGTAAGAAGAGTTACCATTGACCATGTGGAAACATATACTGTGCTGCTATCTGGTGTTTTTGATGGACCTGATGAAGGTGTTACTGGTCTTCTTCACTTGGCAAGTTTGAAGTTTGTTTCATTGAGGCCAGTTCTCGGGGTTAGGCTTTCTGAGGAAATTTCCTCCCTCAGGGTAAGGGTTGAGGTACTAAAGCATGCCTTCGATGCATGTGAGTCACTCCTTGATTGTTCTAGACAACTATGGAAAAAGAGTATGGTGAATGTACTGTCTTGGCTACGTCCAGAAATAATGACTTCGGAAGTTAGGTATGGGTTTGGTAGCTATATGCAAACAGAAGTCGATCCGCAGGCAGAGATGGCAGAGGACACTTGCAAGGCAAGGAAACATACAAGGTTCGATCCTACAGGTTTCTACGAAGCCATTAAGCCTTCAAAATCAGAGCCAATGCTTGAAGATGACATACCAGAGTTACTTCCTAAATTGAGGCCATATCAACGGCGTGCAGCTTTCTGGATGGTGGAACGAGAGAAAGCAGTGGAAGAGAGTCTGGGTGAAAGAGAAAGGAATCAGTTTCATTCTCCATTATGTATACCTGTGGATTTTCTGGACACCAGTTCTCAAATGTTCTTCAATCCATTCAGTGGAAATATTTCATTGTGCACAGAGACTTCTTCACCTTATGTATTTGGAGGCATTCTTGCTGATGAGATGGGCTTGGGAAAAACTGTTGAATTGCTTGCTTGCATCTTTGCTCACCGTAGATCAGCATCTGGAAGTGACATATTAATTGATTTAGAGCCCCCAGTTAATAGGGACCAACAAGTCACTATGAAAAGACTCAAAAGAGAGCGTGTGGAGTGCATATGTGGTGCTGTCAGCGAAAGTCTTAAATATGAAGGATTATGGGTTCAGTGTGACATTTGTGATGCTTGGCAACATGCAGATTGTGTTGGTTATTCACCTAAAGGAAAATCTTTGAAATCAAAACAAGGATGTGAAAGCAAGACATATAAAACTACGATATCTGAGAGGGATGGAGAATATGTATGTCAGATGTGCTCTGAACTGATACAAGCCACTGAATCTCCTATTGCCTCTGGTGCCACTCTCATTGTCTGCCCAGCTTCTATTTTGCCCCAGTGGCATGATGAAATTATATGCCATACACATCAGGGCTCCTTGAAAACTTGTGTTTATGAAGGCGTGCGAGAAACATCTTTTTCCAATACATCTCTGATGGATATCAATGATCTTGCCAGTGCTGACATTGTATTAACTACATATGATGTGCTTAAAGAAGATTTGTCTCATGATTCTGATAGGCATGGAGGTGATCGGCACTTTCTGAGGTTTCAGAAAAGGTACCCAGTTATCCCAACTCTTCTTACAAGAATATACTGGTGGAGGGTTTGCTTGGATGAGGCACAAATGGTGGAGAGTAATACTACTGCTGCCACTGAAATGGCTCTAAGACTCCATTCAAAGTATCGTTGGTGCATTACGGGGACCCCCATTCAGCGAAAGCTTGATGACTTATATGGACTTCTAAGATTCCTCAATGCTAGTCCTTTCAATAAATACAGGTGGTGGACTGATGTTATTCGAGATCCTTATGAGAAGGAAGATGCAGGAGCTATGGAATTTACGCACAAAATTTTCAAACAAATCATGTGGCGTTCTTCTAAAGAATACGTTGCTGATGAATTGGACCTTCCCTCCCAAGAGGAATGCCTCTCTTGGCTTACACTCTCACCAGTTGAGGAGCACTTTTACCAGAGACAACACGAAACTTGTGTCAAAGATGCCCATGAAGTTATCGAAAGTTTGCGAAATGATATTCTCAATAGAAAAGGCCCAGGTTCTGTCTCTTTGAATGGTTCCTCTGATCCTTTAATCACTCACACTGAGGCAGGGAAGCTACTGAATGCTTTGCTGAAGCTTCGTCAAGCTTGTTGTCATCCCCAGGTTGGAAGTTCGGGGTTGCGCTCCCTGCAGCAGTCACCTATGACCATGGAGGAAATACTAATGGTTCTTATAAGCAAGACCAAGATAGAAGGTGAGGAAGCTCTCAGGAAGTTAGTCATTGCTCTGAATGCACTTGCAGCTATTGCTGCAATACAAAAAGATTTTTCTCAAGCTACGTTACTCTACAGTGAAGCTCTTACTTTGGCTGAAGAGCATTCTGAAGATTTCCGCCTTGACCCTTTGTTAAATATACACATTCATCATAATCTTGCTGAAATACTCCCACTGGCTTCAAACTTTGCTCTAATATCGCCATCCAAAGGAAAGCAGTTCTCTGGAACTTCTGAATTTAAGATGACCAAAAGGCATTTAATTGTAAAGGTTGATCATTGCCATGTGAAGAGGCAAAAACTTAGTGGTTGTGATGATGTAAATGTAACAGAACCATCTGCAGAACCATCAGATGTTGCATTTAGCATTTCAGAAAACGACTTAAATGAGGATCAGGGATTTGATAGTTTATCAGCCATCAAATCTCTGATAGCAGAATGTGAAGATTCAAAACATAAATTCTTATCTGTCTTTAGTTCAAAGCTATCTGCAGCCCAACAGGAGTTTCAAAATTCTTACACGCAGGTCTGTAATGCATATAGTGACAGCAGAACAGATCAAAATACATTTTGGTGGTTAGAAGCACTTGATCATGCTGAGCAGAACAAAGATTTCTTGACTGAGTTGATTAGGAAGATTGAAGAAGCCATCTCAGGAACTTCAAACAATTCAAAGTCATCAAGAATAGCTGCTCGTTTCCGAAGCATAAGCTCTCTGAAGTATCAAATTCAGACAGGTTTGGATCACTTAGAGGTCTCTAGAAAAACGCTTCTAGGTCGACTGTTAGAAATTGACCAGACAATGGAAAAACCAAAAGAAGAAGATATTGAACGTGTGGGTAAATGTCAAAATTGTCAGCCTAATTGTGATGGTCCCCCGTGTGTTTTGTGTGAACTAGATGAATTGTTTCAGGATTATGAAGCAAGACTCTTTGTTCTTAAGAACGAACGTGGAGGGATAATTTCATCTGCTGAGGAGGCAGTAGATTTTCAGAAGAAAAACTTTGCATTGAATCATTTCCTCTCAAAGCTATCACAGTCTAATCACAGTTCTACAGTATCTGATATTGGTCATGAAGAACCAAAGAAAAGGAATGTTGGACAAAGAGTTGTGGTTTCAAGATCAGCATCTGAGTTGGAGCTAATTCTTGGAGTTTTAAAGAACTACTGCAAGTCTCGATTAGGAAGGGACAGTGTCTCAGCTGCCACCAAGAATTTACATGTTTTTGAGGGTATGCGAAAGGAGTTTGGCCACGCAAGGTCTTTGGCATTAGCTCAAGCTCAGTATCTGCGTGCACATGATGAAATAAAGATGGCAGTTTCCCGTTTGCACCTAAGGGCAAATGAAGATGATAAATCTCTTGATGCTTTAGGTGAAAATGAATTAGCTGCAGCTAGCTCAGACTTTTCCCATGATAAGTTTATGTCATTGACCATGTTGTCACAGATAAAAGGAAAACTCCGCTACTTAAAGGGTTTGGTTCAATCTAAGCAAAAACTGCAGTTCGAAAGTCCAAAAAGTTCTTCATTTACACTAGAGACAACTGCAAAGTCAAACTCTACAGAAGAGAAGGGTGCACTTATATCTAACACTGATGACGAAACATGCCCTATTTGCCAAGAAAAGCTAGGCAAACAGAAAATGGTTTTTCAATGTGGGCATGTTACATGCTGTAAATGTTTATTTGCTATGACTGAGAAAAGACTTCAAAATAGCAAGCTTCCTAATTGGGTGATGTGCCCTACATGTCGACAGCATACTGATTTTGGAAACATTGCCTATGCTGTTGATGCACATAATAAATCTTCTGATCCTTCAGTGCTGCATGCAATTGACAGCAGTGAAAAATGTGAACCATCCATTAGTGTTAAAGGCTCATATGGAACCAAGATTGAAGCAGTCACAAGAAGAATCTTGTGGGTAAAGGCTAATGATCATAGAGCAAAAGTTCTTGTATTTTCAAGTTGGAATGATGTACTTGATGTATTGGAGCATGCTTTTGCTGCCAATAACATTACCTACATCCGGATGAAGGGAGGCAGAAAAGCTCATGTTGCCATCGGTCAATTTAGAGGAAAACAGAATGGCACAAAAGGATGTGAAGGGACAACAGAAAAATCTATTCAGGTGTTGTTGCTTTTAATCCAACATGGAGCCAATGGACTCAATCTTTTGGAAGCACAGCATGTGGTCCTTGTAGAGCCGTTGCTCAATCCAGCTGCCGAAGCACAAGCAATCAGCCGCGTAAAAGACACGGTTGAAGAGAGTATATATAAACTGAACAGAGGCAGGAGCAATCATTCATTCATCAGTGGAAACACAAAAAACCAAGATCAACCTGTTTTGACCCTGAAGGATGTGGAAGCCTTGCTGTCTAGAGCACCACTAACTATGCCAGAAAGTGATGAAAATCCTAACACAAACACAAATCTTAGACACTTGCCACCATCAGTGGCAGCTGCTATAGCTGCTGAGAGGAGACTTAATAATGAACAAAGGACATGA 4962 0.4081 MGRRKSKPQRAGGIILETNAATELELDKQNVEGGEEAKGDSSGIDKPYFVEVDQLDWLSREHLDISEVVLRDLNLREGFSGFELSEDFYWDQQYLLRFRVCNVSNVLGRIKLGHWPVLPYTDIHLEFVRRVTIDHVETYTVLLSGVFDGPDEGVTGLLHLASLKFVSLRPVLGVRLSEEISSLRVRVEVLKHAFDACESLLDCSRQLWKKSMVNVLSWLRPEIMTSEVRYGFGSYMQTEVDPQAEMAEDTCKARKHTRFDPTGFYEAIKPSKSEPMLEDDIPELLPKLRPYQRRAAFWMVEREKAVEESLGERERNQFHSPLCIPVDFLDTSSQMFFNPFSGNISLCTETSSPYVFGGILADEMGLGKTVELLACIFAHRRSASGSDILIDLEPPVNRDQQVTMKRLKRERVECICGAVSESLKYEGLWVQCDICDAWQHADCVGYSPKGKSLKSKQGCESKTYKTTISERDGEYVCQMCSELIQATESPIASGATLIVCPASILPQWHDEIICHTHQGSLKTCVYEGVRETSFSNTSLMDINDLASADIVLTTYDVLKEDLSHDSDRHGGDRHFLRFQKRYPVIPTLLTRIYWWRVCLDEAQMVESNTTAATEMALRLHSKYRWCITGTPIQRKLDDLYGLLRFLNASPFNKYRWWTDVIRDPYEKEDAGAMEFTHKIFKQIMWRSSKEYVADELDLPSQEECLSWLTLSPVEEHFYQRQHETCVKDAHEVIESLRNDILNRKGPGSVSLNGSSDPLITHTEAGKLLNALLKLRQACCHPQVGSSGLRSLQQSPMTMEEILMVLISKTKIEGEEALRKLVIALNALAAIAAIQKDFSQATLLYSEALTLAEEHSEDFRLDPLLNIHIHHNLAEILPLASNFALISPSKGKQFSGTSEFKMTKRHLIVKVDHCHVKRQKLSGCDDVNVTEPSAEPSDVAFSISENDLNEDQGFDSLSAIKSLIAECEDSKHKFLSVFSSKLSAAQQEFQNSYTQVCNAYSDSRTDQNTFWWLEALDHAEQNKDFLTELIRKIEEAISGTSNNSKSSRIAARFRSISSLKYQIQTGLDHLEVSRKTLLGRLLEIDQTMEKPKEEDIERVGKCQNCQPNCDGPPCVLCELDELFQDYEARLFVLKNERGGIISSAEEAVDFQKKNFALNHFLSKLSQSNHSSTVSDIGHEEPKKRNVGQRVVVSRSASELELILGVLKNYCKSRLGRDSVSAATKNLHVFEGMRKEFGHARSLALAQAQYLRAHDEIKMAVSRLHLRANEDDKSLDALGENELAAASSDFSHDKFMSLTMLSQIKGKLRYLKGLVQSKQKLQFESPKSSSFTLETTAKSNSTEEKGALISNTDDETCPICQEKLGKQKMVFQCGHVTCCKCLFAMTEKRLQNSKLPNWVMCPTCRQHTDFGNIAYAVDAHNKSSDPSVLHAIDSSEKCEPSISVKGSYGTKIEAVTRRILWVKANDHRAKVLVFSSWNDVLDVLEHAFAANNITYIRMKGGRKAHVAIGQFRGKQNGTKGCEGTTEKSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVKDTVEESIYKLNRGRSNHSFISGNTKNQDQPVLTLKDVEALLSRAPLTMPESDENPNTNTNLRHLPPSVAAAIAAERRLNNEQRT 1653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1779 1653 ProSiteProfiles Zinc finger RING-type profile. 1355 1403 IPR001841 -
Aed3g1779 1653 CDD PHD_TCF19_like 415 480 - -
Aed3g1779 1653 Gene3D - 481 708 IPR038718 -
Aed3g1779 1653 Gene3D - 349 400 IPR038718 -
Aed3g1779 1653 Coils Coil 1015 1035 - -
Aed3g1779 1653 ProSitePatterns Zinc finger PHD-type signature. 414 480 IPR019786 -
Aed3g1779 1653 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 268 686 IPR027417 -
Aed3g1779 1653 SMART ultradead3 284 657 IPR014001 -
Aed3g1779 1653 Gene3D - 1426 1628 IPR027417 -
Aed3g1779 1653 Pfam SNF2-related domain 291 783 IPR000330 GO:0005524|GO:0140658
Aed3g1779 1653 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 593 1604 IPR027417 -
Aed3g1779 1653 SUPERFAMILY FYVE/PHD zinc finger 410 482 IPR011011 -
Aed3g1779 1653 SUPERFAMILY RING/U-box 1349 1407 - -
Aed3g1779 1653 CDD SF2_C_SNF 1446 1579 - -
Aed3g1779 1653 Coils Coil 1640 1653 - -
Aed3g1779 1653 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 401 480 IPR013083 -
Aed3g1779 1653 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1335 1417 IPR013083 -
Aed3g1779 1653 SMART ring_2 1355 1402 IPR001841 -
Aed3g1779 1653 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 464 649 IPR014001 -
Aed3g1779 1653 CDD DEXQc_SHPRH 288 687 - -
Aed3g1779 1653 SMART PHD_3 413 481 IPR001965 -
Aed3g1779 1653 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 1 1633 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1779 Aed-Chr3 22373179 22384055 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1779 492 781 RAD5 or RAD16-like Gene Family AT5G43530 31.058 2.23e-34 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aed3g1779 SNF2_N 7.4e-88 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1779 K15710 - gmx:100776659 3019.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g1779 3 22373179 22384055 Aed3g1779 3 22373179 22384055 ECH